- using R version 2.13.0 Under development (unstable) (2011-03-08 r54708)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'lme4/DESCRIPTION' ... OK
- this is package 'lme4' version '0.999375-39'
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'lme4' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
- loading checks for arch 'ppc'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
- loading checks for arch 'x86_64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking sizes of PDF files under inst/doc ... NOTE
'qpdf' made some significant size reductions:
compacted 'Implementation.pdf' from 551Kb to 387Kb
consider running tools::compactPDF() on these files
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'ppc' ... OK
** running examples for arch 'x86_64' ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ...
** running tests for arch 'i386' OK
Running 'Gamma.R'
Running 'extras.R'
Running 'lmer-1.R'
Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...301c301
< [1,] 2.19089
---
> [1,] 2.190890
339c339
< [1,] 2.19089 2.357347 1.2607 1.310223 1.068853 0.9335019 1.010767 0.4688515
---
> [1,] 2.190890 2.357347 1.2607 1.310223 1.068853 0.9335019 1.010767 0.4688515
358c358
< (Intercept) 5.5 8.500135 7.220989 4.496626 8.953627 9.33549 3.47158 5.391293
---
> (Intercept) 5.5 8.500135 7.22099 4.496626 8.953627 9.33549 3.471580 5.391293
Running 'lmer-conv.R'
Running 'lmer.R'
Running 'nlmer-conv.R'
Running 'nlmer.R'
Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...25c25
< 152.1 181 -66.07 132.1
---
> 152.1 181.0 -66.07 132.1
29c29
< lKa 0.227360 0.47682 NaN
---
> lKa 0.227357 0.47682 NaN
31c31
< Residual 0.591715 0.76923
---
> Residual 0.591717 0.76923
38c38
< lCl -3.23552 0.05235 -61.80
---
> lCl -3.23551 0.05235 -61.80
57c57
< Subject lKa 0.227492 0.47696
---
> Subject lKa 0.227494 0.47696
59c59
< Residual 0.591691 0.76921
---
> Residual 0.591690 0.76921
66c66
< lCl -3.23539 0.05236 -61.79
---
> lCl -3.23538 0.05236 -61.79
Running 'simulate.R'
** running tests for arch 'x86_64' OK
Running 'Gamma.R'
Running 'extras.R'
Running 'lmer-1.R'
Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...301c301
< [1,] 2.19089
---
> [1,] 2.190890
339c339
< [1,] 2.19089 2.357347 1.2607 1.310223 1.068853 0.9335019 1.010767 0.4688515
---
> [1,] 2.190890 2.357347 1.2607 1.310223 1.068853 0.9335019 1.010767 0.4688515
358c358
< (Intercept) 5.5 8.500135 7.220989 4.496626 8.953627 9.33549 3.47158 5.391293
---
> (Intercept) 5.5 8.500135 7.22099 4.496626 8.953627 9.33549 3.471580 5.391293
Running 'lmer-conv.R'
Running 'lmer.R'
Running 'nlmer-conv.R'
Running 'nlmer.R'
Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...25c25
< 152.1 181 -66.07 132.1
---
> 152.1 181.0 -66.07 132.1
29c29
< lKa 0.227360 0.47682 NaN
---
> lKa 0.227357 0.47682 NaN
31c31
< Residual 0.591715 0.76923
---
> Residual 0.591717 0.76923
38c38
< lCl -3.23552 0.05235 -61.80
---
> lCl -3.23551 0.05235 -61.80
57c57
< Subject lKa 0.227492 0.47696
---
> Subject lKa 0.227494 0.47696
59c59
< Residual 0.591691 0.76921
---
> Residual 0.591690 0.76921
66c66
< lCl -3.23539 0.05236 -61.79
---
> lCl -3.23538 0.05236 -61.79
Running 'simulate.R'
- checking package vignettes in 'inst/doc' ... OK
- checking PDF version of manual ... OK
- elapsed time (check, wall clock): 7:40