• using R version 2.13.0 Under development (unstable) (2011-03-13 r54781)
  • using platform: i386-apple-darwin9.8.0 (32-bit)
  • using session charset: ASCII
  • checking for file 'hierfstat/DESCRIPTION' ... OK
  • this is package 'hierfstat' version '0.04-4'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'hierfstat' can be installed ... WARNING
    Found the following significant warnings:
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/exhier.Rd:10: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/exhier.Rd:11: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/exhier.Rd:12: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/exhier.Rd:13: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/exhier.Rd:14: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/exhier.Rd:15: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:10: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:11: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:12: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:13: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:14: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:15: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:16: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/gtrunchier.Rd:17: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/yangex.Rd:11: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/yangex.Rd:12: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/yangex.Rd:13: unknown macro '\item'
    Warning: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00_pkg_src/hierfstat/man/yangex.Rd:14: unknown macro '\item'
    See http://www.r-project.org/nosvn/R.check/r-devel-macosx-ix86/hierfstat-00install.html for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... WARNING
    prepare_Rd: exhier.Rd:10: unknown macro '\item'
    prepare_Rd: exhier.Rd:11: unknown macro '\item'
    prepare_Rd: exhier.Rd:12: unknown macro '\item'
    prepare_Rd: exhier.Rd:13: unknown macro '\item'
    prepare_Rd: exhier.Rd:14: unknown macro '\item'
    prepare_Rd: exhier.Rd:15: unknown macro '\item'
    prepare_Rd: exhier.Rd:5: Dropping empty section \description
    checkRd: (5) exhier.Rd:0-26: Must have a \description
    prepare_Rd: gtrunchier.Rd:10: unknown macro '\item'
    prepare_Rd: gtrunchier.Rd:11: unknown macro '\item'
    prepare_Rd: gtrunchier.Rd:12: unknown macro '\item'
    prepare_Rd: gtrunchier.Rd:13: unknown macro '\item'
    prepare_Rd: gtrunchier.Rd:14: unknown macro '\item'
    prepare_Rd: gtrunchier.Rd:15: unknown macro '\item'
    prepare_Rd: gtrunchier.Rd:16: unknown macro '\item'
    prepare_Rd: gtrunchier.Rd:17: unknown macro '\item'
    prepare_Rd: test.between.Rd:4: Dropping empty section \description
    checkRd: (5) test.between.Rd:0-27: Must have a \description
    prepare_Rd: test.g.Rd:4: Dropping empty section \description
    checkRd: (5) test.g.Rd:0-25: Must have a \description
    prepare_Rd: test.within.Rd:4: Dropping empty section \description
    checkRd: (5) test.within.Rd:0-27: Must have a \description
    prepare_Rd: yangex.Rd:11: unknown macro '\item'
    prepare_Rd: yangex.Rd:12: unknown macro '\item'
    prepare_Rd: yangex.Rd:13: unknown macro '\item'
    prepare_Rd: yangex.Rd:14: unknown macro '\item'
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... WARNING
    Files not of a type allowed in a 'data' directory:
    diploid.dat
    Please use e.g. 'inst/extdata' for non-R data files
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under inst/doc ... OK
  • checking examples ... OK
  • checking PDF version of manual ... OK
    WARNING: There were 3 warnings, see
    '/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hierfstat.Rcheck/00check.log'
    for details
  • elapsed time (check, wall clock): 0:41