- using R version 2.13.0 Under development (unstable) (2011-03-13 r54781)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'gplots/DESCRIPTION' ... OK
- this is package 'gplots' version '2.8.0'
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'gplots' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the name space can be loaded with stated dependencies ... OK
- checking whether the name space can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
plotCI: multiple local function definitions for 'myarrows' with
different formal arguments
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: MASS
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... WARNING
Warning: large data file(s) saved inefficiently:
size ASCII compress
rtPCR.rda 239Kb FALSE none
- checking sizes of PDF files under inst/doc ... OK
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... OK
Running 'heatmap2Test.R'
Comparing 'heatmap2Test.Rout' to 'heatmap2Test.Rout.save' ...4,11d3
< gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
<
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLSX' (Excel 2007+) files.
<
< gdata: Run the function 'installXLSXsupport()'
< gdata: to automatically download and install the perl
< gdata: libaries needed to support Excel XLS and XLSX formats.
15d6
< The following object(s) are masked from 'package:stats':
17,19c8
< nobs
<
< The following object(s) are masked from 'package:utils':
---
> The following object(s) are masked from package:utils :
26c15,16
< The following object(s) are masked from 'package:stats':
---
>
> The following object(s) are masked from package:stats :
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< .. | | |--leaf "Lincoln Continental" ( value.Lincoln Continental = 66.1 )
---
> .. | | |--leaf "Lincoln Continental" ( value.Lincoln Continental = 66 )
149c139
< .. | | |--leaf "Valiant" ( value.Valiant = 35 )
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> .. | | |--leaf "Valiant" ( value.Valiant = 35.0 )
152c142
< .. | |--[dendrogram w/ 2 branches and 2 members at h = 14, midpoint = 0.5, value = 93.2]
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> .. | |--[dendrogram w/ 2 branches and 2 members at h = 14.0, midpoint = 0.5, value = 93.2]
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< .. | `--[dendrogram w/ 2 branches and 2 members at h = 0.983, midpoint = 0.5, value = 92.9]
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> .. | `--[dendrogram w/ 2 branches and 2 members at h = 0.983, midpoint = 0.5, value = 93]
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< .. |--[dendrogram w/ 2 branches and 4 members at h = 14.8, midpoint = 0.875, value = 74.9]
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> .. |--[dendrogram w/ 2 branches and 4 members at h = 14.8, midpoint = 0.875, value = 75]
168c158
< .. `--[dendrogram w/ 2 branches and 12 members at h = 113, midpoint = 2.3, value = 334]
---
> .. `--[dendrogram w/ 2 branches and 12 members at h = 113, midpoint = 2.30, value = 334]
Running 'heatmap_to_heatmap.2_test.R'
Running 'plotmeans_nobars.R'
- checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/gplots.Rcheck/00check.log'
for details
- elapsed time (check, wall clock): 0:52