• using R version 2.9.0 Under development (unstable) (2008-10-11 r46691)
• using session charset: UTF-8
• checking for file 'assist/DESCRIPTION' ... OK
• this is package 'assist' version '2.0'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'assist' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  hat.ssr: possible error in gdsidr(s = swk, q = qSum, y = y, family =
  ssr.obj$expand.call$family, vmu = ssr.obj$expand.call$spar, tol1 =
  ssr.obj$expand.call$control$tol, tol2 =
  ssr.obj$expand.call$control$tol.g, maxite =
  ssr.obj$expand.call$control$maxit.g, job =
  ssr.obj$expand.call$control$job, limnla = ssr.obj$expand.call$limnla,
  prec = ssr.obj$expand.call$control$prec): unused argument(s) (maxite
  = ssr.obj$expand.call$control$maxit.g)
  plot.bCI: no visible global function definition for ‘xyplot’
  slm: no visible binding for global variable ‘response’
  snm: no visible global function definition for ‘matDiag’
  ssr: no visible binding for global variable ‘response’
  table2: no visible global function definition for ‘is.category’
  table2: no visible global function definition for ‘which.na’
  xyplot2: no visible global function definition for ‘xyplot’
  xyplot2 : <anonymous>: no visible global function definition for
  ‘strip.default’
  xyplot2 : <anonymous>: no visible global function definition for
  ‘panel.xyplot’
  xyplot2 : <anonymous>: no visible global function definition for
  ‘panel.superpose’
• checking Rd files ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'anova.ssr':
  anova.ssr
  
  S3 methods shown with full name in documentation object 'deviance.ssr':
  deviance.ssr
  
  S3 methods shown with full name in documentation object 'intervals.nnr':
  intervals.nnr
  
  S3 methods shown with full name in documentation object 'intervals.slm':
  intervals.slm
  
  S3 methods shown with full name in documentation object 'intervals.snm':
  intervals.snm
  
  S3 methods shown with full name in documentation object 'intervals.snr':
  intervals.snr
  
  S3 methods shown with full name in documentation object 'plot.bCI':
  plot.bCI
  
  S3 methods shown with full name in documentation object 'plot.ssr':
  plot.ssr
  
  S3 methods shown with full name in documentation object 'predict.slm':
  predict.slm
  
  S3 methods shown with full name in documentation object 'predict.snm':
  predict.snm
  
  S3 methods shown with full name in documentation object 'predict.snr':
  predict.snr
  
  S3 methods shown with full name in documentation object 'predict.ssr':
  predict.ssr
  
  S3 methods shown with full name in documentation object ' print.anova.ssr':
  print.anova.ssr
  
  S3 methods shown with full name in documentation object 'print.nnr':
  print.nnr
  
  S3 methods shown with full name in documentation object 'print.slm':
  print.slm
  
  S3 methods shown with full name in documentation object 'print.snm':
  print.snm
  
  S3 methods shown with full name in documentation object 'print.snr':
  print.snr
  
  S3 methods shown with full name in documentation object ' print.ssr ':
  print.ssr
  
  S3 methods shown with full name in documentation object 'print.summary.nnr':
  print.summary.nnr
  
  S3 methods shown with full name in documentation object 'print.summary.slm':
  print.summary.slm
  
  S3 methods shown with full name in documentation object 'print.summary.snm':
  print.summary.snm
  
  S3 methods shown with full name in documentation object 'print.summary.snr':
  print.summary.snr
  
  S3 methods shown with full name in documentation object 'print.summary.ssr':
  print.summary.ssr
  
  S3 methods shown with full name in documentation object 'summary.nnr':
  summary.nnr
  
  S3 methods shown with full name in documentation object 'summary.slm':
  summary.slm
  
  S3 methods shown with full name in documentation object 'summary.snm':
  summary.snm
  
  S3 methods shown with full name in documentation object 'summary.snr':
  summary.snr
  
  S3 methods shown with full name in documentation object 'summary.ssr':
  summary.ssr
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• creating assist-Ex.R ... OK
• checking examples ... OK
• creating assist-manual.tex ... OK
• checking assist-manual.tex using pdflatex ... OK