• using log directory '/data/gannet/tmp/ripley/R/packages/tests-Sun/survrec.Rcheck'
• using R version 2.11.0 Under development (unstable) (2010-02-03 r51097)
• using session charset: UTF-8
• checking for file 'survrec/DESCRIPTION' ... OK
• this is package 'survrec' version '1.1-7'
• package encoding: latin1
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'survrec' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ...sh: line 1: 7242 Segmentation fault (core dumped) LANGUAGE=en '/data/gannet/ripley/R/R-SunStudio/bin/R' --vanilla --encoding latin1 < survrec-Ex.R > survrec-Ex.Rout 2>&1
  ERROR
  Running examples in 'survrec-Ex.R' failed.
  The error most likely occurred in:
  
  > ### * survdiffr
  >
  > flush(stderr()); flush(stdout())
  >
  > ### Name: survdiffr
  > ### Title: Test median survival differences (or other quantile)
  > ### Aliases: survdiffr
  > ### Keywords: survival
  >
  > ### ** Examples
  >
  >
  > data(colon)
  >
  > #We will compare the median survival time for three dukes stages
  > fit<-survdiffr(Survr(hc,time,event)~as.factor(dukes),data=colon,q=0.5)
  
  *** caught segfault ***
  address 0x7f7d8826a000, cause 'invalid permissions'
  
  Traceback:
  1: .Fortran("bootmedian", as.integer(n), as.integer(m), as.double(failed), as.double(sfailed), as.integer(nfailed), as.double(censored), as.double(tau), as.integer(B), as.integer(type.boot), as.double(q), as.double(rep(0, B)), PACKAGE = "survrec")
  2: survdiffr(Survr(hc, time, event) ~ as.factor(dukes), data = colon, q = 0.5)
  aborting ...
  Time 0:28.89, 14.96 + 2.67