• using R version 2.11.0 Under development (unstable) (2010-03-17 r51307)
  • using session charset: UTF-8
  • checking for file 'spam/DESCRIPTION' ... OK
  • this is package 'spam' version '0.20-3'
  • checking package name space information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'spam' can be installed ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the name space can be loaded with stated dependencies ... OK
  • checking whether the name space can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking data for non-ASCII characters ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $BLAS_LIBS ... OK
  • checking examples ... OK
  • checking tests ... ERROR
    Running the tests in 'tests/demo_article-jss-example2.R' failed.
    Last 13 lines of output:
    > uRu <- t(u) %*% (R %*% u)/2
    > etauetau <- t(eta-u) %*% (eta-u)/2
    >
    > postshape <- ahyper + c(n-1,n)/2
    >
    > accept <- numeric(totalg)
    >
    > struct <- chol(Q1 + Q2,
    + memory=list(nnzcolindices=6467))
    Error in .local(x, ...) :
    Singularity problem when calculating the Cholesky factor.
    Calls: chol -> chol -> .local
    Execution halted