• using log directory '/data/gannet/tmp/ripley/R/packages/tests-Sun/rgenoud.Rcheck'
• using R version 2.11.0 Under development (unstable) (2010-02-03 r51097)
• using session charset: UTF-8
• checking for file 'rgenoud/DESCRIPTION' ... OK
• this is package 'rgenoud' version '5.6-6'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'rgenoud' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  genoud : fnLexicalSort: no visible binding for global variable ‘indx’
  genoud: multiple local function definitions for ‘fn1.bfgs’ with
  different formal arguments
  genoud: multiple local function definitions for ‘gr1’ with different
  formal arguments
  genoud: multiple local function definitions for ‘hess.fn’ with
  different formal arguments
  genoud_transform : fnLexicalSort: no visible binding for global
  variable ‘indx’
  genoud_transform: multiple local function definitions for ‘fn1.bfgs’
  with different formal arguments
  genoud_transform: multiple local function definitions for ‘gr1’ with
  different formal arguments
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking tests ...
  Running ‘tests.R’
  Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...11c11
  < Thu Feb 4 00:34:16 2010
  ---
  > Mon Aug 10 18:52:39 2009
  169c169
  < Thu Feb 4 00:34:18 2010
  ---
  > Mon Aug 10 18:52:41 2009
  198c198
  < Thu Feb 4 00:34:18 2010
  ---
  > Mon Aug 10 18:52:41 2009
  356,357c356,357
  < Thu Feb 4 00:34:20 2010
  < Total run time : 0 hours 0 minutes and 2 seconds
  ---
  > Mon Aug 10 18:52:44 2009
  > Total run time : 0 hours 0 minutes and 3 seconds
  392c392
  < Thu Feb 4 00:34:20 2010
  ---
  > Mon Aug 10 18:52:44 2009
  550,551c550,551
  < Thu Feb 4 00:34:24 2010
  < Total run time : 0 hours 0 minutes and 4 seconds
  ---
  > Mon Aug 10 18:52:46 2009
  > Total run time : 0 hours 0 minutes and 2 seconds
  600c600
  < Thu Feb 4 00:34:24 2010
  ---
  > Mon Aug 10 18:52:46 2009
  757c757
  < #unique......... 3060, #Total UniqueCount: 34343
  ---
  > #unique......... 3061, #Total UniqueCount: 34344
  771c771
  < #unique......... 3038, #Total UniqueCount: 37381
  ---
  > #unique......... 3038, #Total UniqueCount: 37382
  785c785
  < #unique......... 3017, #Total UniqueCount: 40398
  ---
  > #unique......... 3017, #Total UniqueCount: 40399
  799c799
  < #unique......... 3042, #Total UniqueCount: 43440
  ---
  > #unique......... 3042, #Total UniqueCount: 43441
  822,823c822,823
  < Thu Feb 4 00:34:41 2010
  < Total run time : 0 hours 0 minutes and 17 seconds
  ---
  > Mon Aug 10 18:52:58 2009
  > Total run time : 0 hours 0 minutes and 12 seconds
  OK
• checking package vignettes in 'inst/doc' ... OK
• checking PDF version of manual ... OK
  
  Time 1:28.00, 59.39 + 4.61