• using log directory '/data/gannet/tmp/ripley/R/packages/tests-Sun/pomp.Rcheck'
• using R version 2.11.0 Under development (unstable) (2010-02-03 r51097)
• using session charset: UTF-8
• checking for file 'pomp/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'pomp' version '0.27-2'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'pomp' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking tests ...
  Running ‘examples.R’
  Running ‘logistic.R’
  Comparing ‘logistic.Rout’ to ‘logistic.Rout.save’ ... OK
  Running ‘ou2-forecast.R’
  Comparing ‘ou2-forecast.Rout’ to ‘ou2-forecast.Rout.save’ ... OK
  Running ‘ou2-kalman.R’
  Comparing ‘ou2-kalman.Rout’ to ‘ou2-kalman.Rout.save’ ... OK
  Running ‘ou2-mif.R’
  Comparing ‘ou2-mif.Rout’ to ‘ou2-mif.Rout.save’ ... OK
  Running ‘ou2-nlf.R’
  Comparing ‘ou2-nlf.Rout’ to ‘ou2-nlf.Rout.save’ ... OK
  Running ‘ou2-simulate.R’
  Comparing ‘ou2-simulate.Rout’ to ‘ou2-simulate.Rout.save’ ... OK
  Running ‘ou2-trajmatch.R’
  Comparing ‘ou2-trajmatch.Rout’ to ‘ou2-trajmatch.Rout.save’ ... OK
  Running ‘rw2.R’
  Comparing ‘rw2.Rout’ to ‘rw2.Rout.save’ ... OK
  Running ‘sir.R’
  Comparing ‘sir.Rout’ to ‘sir.Rout.save’ ... OK
  OK
• checking package vignettes in 'inst/doc' ... OK
• checking PDF version of manual ... OK
  
  Time 4:36.76, 184.32 + 7.45