- using log directory '/data/gannet/tmp/ripley/R/packages/tests-Sun/party.Rcheck'
- using R version 2.11.0 Under development (unstable) (2010-02-03 r51097)
- using session charset: UTF-8
- checking for file 'party/DESCRIPTION' ... OK
- this is package 'party' version '0.9-9991'
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'party' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the name space can be loaded with stated dependencies ... OK
- checking whether the name space can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... OK
- checking differences from 'party-Ex.Rout' to 'party-Ex.Rout.save' ...
352,355d351
<
< detaching 'package:ipred', 'package:class', 'package:nnet',
< 'package:mlbench', 'package:rpart'
<
494,497d489
<
< detaching 'package:ipred', 'package:class', 'package:nnet',
< 'package:mlbench', 'package:rpart'
<
528c520
< 0.278 0.000 0.392
---
> 0.248 0.000 0.251
652,654d643
<
< detaching 'package:mlbench'
<
737,740d725
<
< detaching 'package:ipred', 'package:class', 'package:nnet',
< 'package:mlbench', 'package:rpart'
<
816,818d800
<
< detaching 'package:mlbench'
<
OK
- checking tests ...
Running ‘Distributions.R’
Comparing ‘Distributions.Rout’ to ‘Distributions.Rout.save’ ...12d11
< The following object(s) are masked from 'package:party':
14,18c13,16
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘IndependenceTest-regtest.R’
Comparing ‘IndependenceTest-regtest.Rout’ to ‘IndependenceTest-regtest.Rout.save’ ...9d8
< The following object(s) are masked from 'package:party':
11,15c10,13
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘LinearStatistic-regtest.R’
Comparing ‘LinearStatistic-regtest.Rout’ to ‘LinearStatistic-regtest.Rout.save’ ...9d8
< The following object(s) are masked from 'package:party':
11,15c10,13
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘Node-regtest.R’
Comparing ‘Node-regtest.Rout’ to ‘Node-regtest.Rout.save’ ...11d10
< The following object(s) are masked from 'package:party':
13,17c12,15
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘Predict-regtest.R’
Comparing ‘Predict-regtest.Rout’ to ‘Predict-regtest.Rout.save’ ...13d12
< The following object(s) are masked from 'package:party':
15,19c14,17
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘RandomForest-regtest.R’
Comparing ‘RandomForest-regtest.Rout’ to ‘RandomForest-regtest.Rout.save’ ...21c21
< 686 10800 10800 4395 1814 1814 1990
---
> 686 12028 12028 4813 1990 1814 1990
25c25
< 686 4360 4360 1912 1975 1807 1990
---
> 686 4659 4659 2233 1502 1493 1701
31c31
< 0.0001078863 -0.0004544466 -0.0009830766 0.0018710675 0.0011778295
---
> 1.378143e-03 1.209502e-04 2.168549e-03 1.514677e-03 5.667840e-04
33c33
< 0.0000000000 0.0025454952 0.0005471634 0.0027088332 -0.0004411765
---
> 1.412698e-03 6.944784e-04 1.330209e-04 5.859778e-04 1.107716e-03
35c35
< 0.0012977019 0.0009869237 0.0027483894 0.0024806656 0.0066809686
---
> 3.161966e-03 4.259328e-04 2.854476e-03 3.877337e-03 5.508606e-03
37c37
< 0.0095388071 0.0030451983 -0.0001130137 0.0003381307 0.0020927481
---
> 8.549616e-03 2.230695e-03 -2.072968e-05 5.757744e-04 7.067444e-04
39c39
< 0.0119531721 0.0079512917 0.0002417874 0.0015881947 0.0025891841
---
> 7.905153e-03 9.364023e-03 8.835635e-04 -6.822148e-06 2.760828e-03
41c41
< 0.0139595603 0.0029949189 0.0001627648 0.0001315789 0.0006747093
---
> 1.532708e-02 5.644047e-03 -5.263158e-04 -2.631579e-04 7.012714e-04
43c43
< 0.0028985507 0.0109959056 0.0008750480 0.0011327968 0.0024171129
---
> 3.487280e-03 8.027564e-03 1.545135e-03 6.978341e-04 1.650312e-04
45c45
< 0.0003067841 0.0007386331 0.0002926651 0.0000000000 0.0008163957
---
> 2.733615e-04 7.679438e-04 1.833333e-03 1.793247e-05 5.063291e-04
47c47
< 0.0017008343 0.0039882277 0.0251031844 0.0036127344 0.0214146820
---
> 1.020071e-03 1.314567e-02 2.843290e-02 5.058854e-03 1.968965e-02
49c49
< 0.0101805222 0.0323052022 -0.0003199020 0.0009547294 -0.0002529212
---
> 1.645358e-02 2.553688e-02 -3.042254e-04 6.796128e-05 -1.097494e-05
51c51
< 0.0041417890 0.0012373288 0.0121643877 0.0009656132 0.0090851743
---
> 1.545523e-03 8.665070e-04 1.412770e-02 -3.284120e-04 1.052537e-02
53c53
< 0.0001651025 0.0081761290 0.0007421363 0.0059208085 0.0088594469
---
> -8.831169e-04 9.304242e-03 2.483731e-03 3.580956e-03 5.975207e-03
55c55
< 0.0040013765 0.0002877711
---
> 2.511682e-03 1.100651e-03
62,71c62,71
< 2 1.0000000 0.3243243 0.7500000 0.60000000 0.2368421 0.10810811 0.8108108
< 43 0.3243243 1.0000000 0.2222222 0.13157895 0.1052632 0.34146341 0.2500000
< 25 0.7500000 0.2222222 1.0000000 0.57500000 0.2285714 0.10000000 0.7941176
< 65 0.6000000 0.1315789 0.5750000 1.00000000 0.1315789 0.04347826 0.6470588
< 70 0.2368421 0.1052632 0.2285714 0.13157895 1.0000000 0.12500000 0.2500000
< 16 0.1081081 0.3414634 0.1000000 0.04347826 0.1250000 1.00000000 0.1315789
< 6 0.8108108 0.2500000 0.7941176 0.64705882 0.2500000 0.13157895 1.0000000
< 5 0.7187500 0.1714286 0.7575758 0.88235294 0.1388889 0.07894737 0.7837838
< 12 0.7619048 0.1764706 0.7027027 0.57894737 0.2500000 0.08695652 0.8157895
< 63 0.6410256 0.3157895 0.4871795 0.52272727 0.2941176 0.18604651 0.7027027
---
> 2 1.0000000 0.3125000 0.8250000 0.5250000 0.1764706 0.15151515 0.8285714
> 43 0.3125000 1.0000000 0.2250000 0.1428571 0.0882353 0.39473684 0.2105263
> 25 0.8250000 0.2250000 1.0000000 0.5384615 0.2285714 0.08823529 0.8333333
> 65 0.5250000 0.1428571 0.5384615 1.0000000 0.1081081 0.00000000 0.6500000
> 70 0.1764706 0.0882353 0.2285714 0.1081081 1.0000000 0.21875000 0.2000000
> 16 0.1515152 0.3947368 0.0882353 0.0000000 0.2187500 1.00000000 0.1578947
> 6 0.8285714 0.2105263 0.8333333 0.6500000 0.2000000 0.15789474 1.0000000
> 5 0.8000000 0.1842105 0.8055556 0.7948718 0.1363636 0.02631579 0.8048780
> 12 0.8571429 0.2000000 0.7428571 0.4736842 0.1842105 0.09523810 0.8000000
> 63 0.7027027 0.3421053 0.6190476 0.4791667 0.2222222 0.18604651 0.7560976
73,82c73,82
< 2 0.71875000 0.76190476 0.6410256
< 43 0.17142857 0.17647059 0.3157895
< 25 0.75757576 0.70270270 0.4871795
< 65 0.88235294 0.57894737 0.5227273
< 70 0.13888889 0.25000000 0.2941176
< 16 0.07894737 0.08695652 0.1860465
< 6 0.78378378 0.81578947 0.7027027
< 5 1.00000000 0.86111111 0.6176471
< 12 0.86111111 1.00000000 0.6153846
< 63 0.61764706 0.61538462 1.0000000
---
> 2 0.80000000 0.8571429 0.7027027
> 43 0.18421053 0.2000000 0.3421053
> 25 0.80555556 0.7428571 0.6190476
> 65 0.79487179 0.4736842 0.4791667
> 70 0.13636364 0.1842105 0.2222222
> 16 0.02631579 0.0952381 0.1860465
> 6 0.80487805 0.8000000 0.7560976
> 5 1.00000000 0.8500000 0.7380952
> 12 0.85000000 1.0000000 0.7209302
> 63 0.73809524 0.7209302 1.0000000
89c89
< 0.1236364 0.0200000 0.2436364 0.2563636
---
> 0.0600000 0.0000000 0.3672727 0.2309091
92c92
< 0.003636364 0.014545455 0.110909091 0.152727273
---
> 0.003636364 0.000000000 0.234545455 0.154545455
99c99
< 65.85936 161.41311 706.51774 -19.86357 14.72703
---
> 18.709803 419.161930 468.897255 12.324762 -5.843064
102c102
< 14.486338 10.196340 451.547285 -4.598619 17.783440
---
> 21.781398 310.203904 337.112896 -8.277057 14.038489
107c107
< 0.056833508 0.024208517 0.014129457 0.006748831 0.012370187
---
> 0.026676924 0.017718899 0.024070157 0.003977788 0.004566563
110c110
< 0.034929596 -0.002766734 0.020408577 0.008576144 0.008196166
---
> 0.027007376 0.014911124 0.019483110 0.008703068 0.004605263
Running ‘Splits-regtest.R’
Comparing ‘Splits-regtest.Rout’ to ‘Splits-regtest.Rout.save’ ... OK
Running ‘TestStatistic-regtest.R’
Comparing ‘TestStatistic-regtest.Rout’ to ‘TestStatistic-regtest.Rout.save’ ...9d8
< The following object(s) are masked from 'package:party':
11,15c10,13
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘TreeGrow-regtest.R’
Comparing ‘TreeGrow-regtest.Rout’ to ‘TreeGrow-regtest.Rout.save’ ...13d12
< The following object(s) are masked from 'package:party':
15,19c14,17
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘Utils-regtest.R’
Comparing ‘Utils-regtest.Rout’ to ‘Utils-regtest.Rout.save’ ...11d10
< The following object(s) are masked from 'package:party':
13,17c12,15
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘bugfixes.R’
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ...9d8
< The following object(s) are masked from 'package:party':
11,15c10,13
< cforest, cforest_classical, cforest_control, cforest_unbiased,
< conditionalTree, ctree, ctree_control, ctree_memory, edge_simple,
< mob, mob_control, node_barplot, node_bivplot, node_boxplot,
< node_density, node_hist, node_inner, node_scatterplot, node_surv,
< node_terminal, proximity, ptrafo, reweight, sctest.mob, varimp
---
> The following object(s) are masked from package:party :
>
> cforest cforest_classical cforest_control cforest_unbiased conditionalTree ctree ctree_control ctree_memory edge_simple mob mob_control node_barplot node_bivplot node_boxplot node_density node_hist node_inner node_scatterplot node_surv node_terminal proximity ptrafo reweight sctest.mob varimp
>
Running ‘codetools-checks.R’
Comparing ‘codetools-checks.Rout’ to ‘codetools-checks.Rout.save’ ... OK
Running ‘mob.R’
Comparing ‘mob.Rout’ to ‘mob.Rout.save’ ... OK
OK
- checking package vignettes in 'inst/doc' ... OK
- checking PDF version of manual ... OK
Time 5:44.94, 189.31 + 18.28