• using R version 2.11.0 Under development (unstable) (2009-11-24 r50554)
• using session charset: UTF-8
• checking for file 'labdsv/DESCRIPTION' ... OK
• this is package 'labdsv' version '1.3-1'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'labdsv' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... WARNING
  Obsolete package(s) ‘mva’ in Rd xrefs
  Unknown package(s) ‘optpart’ in Rd xrefs
  Missing link(s) in documentation object './man/duarm.Rd':
  ‘[labdsv]{partana}’
  
  Missing link(s) in documentation object './man/matrify.Rd':
  ‘’
  
  Missing link(s) in documentation object './man/nmds.Rd':
  ‘[labdsv]{isoMDS}’
  
  Missing link(s) in documentation object './man/pca.Rd':
  ‘[MASS]{prcomp}’ ‘[labdsv]{fso}’
  
  Missing link(s) in documentation object './man/pco.Rd':
  ‘[MASS]{cmdscale}’
  
  Missing link(s) in documentation object './man/plot.pca.Rd':
  ‘[vegan]{vegan}’
  
  See the information in section 'Cross-references' of the 'Writing R
  Extensions' manual.
  
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... ERROR
  Running examples in 'labdsv-Ex.R' failed.
  The error most likely occurred in:
  
  > ### * duleg
  >
  > flush(stderr()); flush(stdout())
  >
  > ### Name: duleg
  > ### Title: Dufrene-Legendre Indicator Species Analysis
  > ### Aliases: duleg summary.duleg
  > ### Keywords: cluster
  >
  > ### ** Examples
  >
  > data(bryceveg) # returns a vegetation data.frame
  > dis.bc <- dsvdis(bryceveg,'bray/curtis') # returns a dissimilarity matrix
  > clust <- sample(1:5,nrow(bryceveg),replace=TRUE)
  > duleg(bryceveg,clust)
  
  *** caught segfault ***
  address 0x31002009, cause 'memory not mapped'
  
  Traceback:
  1: .Fortran("duleg", as.double(as.matrix(taxa)), as.integer(numplt), as.integer(numspc), as.integer(factor(clustering)), as.integer(table(clustering)), as.integer(numcls), as.integer(numitr), relfrq = relfrq, relabu = relabu, indval = indval, pval = pval, indcls = indcls, maxcls = as.integer(maxcls), as.double(tmpfrq), as.double(tmpabu), as.integer(pclass), as.integer(tclass), PACKAGE = "labdsv")
  2: duleg(bryceveg, clust)
  aborting ...