• using R version 2.11.0 Under development (unstable) (2009-11-24 r50554)
• using session charset: UTF-8
• checking for file 'coin/DESCRIPTION' ... OK
• this is package 'coin' version '1.0-8'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'coin' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking differences from 'coin-Ex.Rout' to 'coin-Ex.Rout.save' ...
  4,5c4,5
  < > cleanEx()
  < > nameEx("ContingencyTests")
  ---
  > > assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
  > > cleanEx(); nameEx("ContingencyTests")
  142,143c142
  < > cleanEx()
  < > nameEx("IndependenceTest")
  ---
  > > cleanEx(); nameEx("IndependenceTest")
  203,204c202
  < > cleanEx()
  < > nameEx("LocationTests")
  ---
  > > cleanEx(); nameEx("LocationTests")
  376,380c374
  < > cleanEx()
  <
  < detaching 'package:multcomp'
  <
  < > nameEx("MarginalHomogeneityTest")
  ---
  > > cleanEx(); nameEx("MarginalHomogeneityTest")
  448,449c442
  < > cleanEx()
  < > nameEx("MaxstatTest")
  ---
  > > cleanEx(); nameEx("MaxstatTest")
  469c462
  < maxT = 4.3139, p-value = 0.0001796
  ---
  > maxT = 4.3139, p-value = 0.0001256
  510c503
  < maxT = 3.5691, p-value = 0.004179
  ---
  > maxT = 3.5691, p-value = 0.004194
  524c517
  < maxT = 2.4033, p-value = 0.1565
  ---
  > maxT = 2.4033, p-value = 0.1554
  534,535c527
  < > cleanEx()
  < > nameEx("PermutationDistribution")
  ---
  > > cleanEx(); nameEx("PermutationDistribution")
  579,580c571
  < > cleanEx()
  < > nameEx("ScaleTests")
  ---
  > > cleanEx(); nameEx("ScaleTests")
  670,671c661
  < > cleanEx()
  < > nameEx("SpearmanTest")
  ---
  > > cleanEx(); nameEx("SpearmanTest")
  697,698c687
  < > cleanEx()
  < > nameEx("SurvTest")
  ---
  > > cleanEx(); nameEx("SurvTest")
  798,799c787
  < > cleanEx()
  < > nameEx("SymmetryTests")
  ---
  > > cleanEx(); nameEx("SymmetryTests")
  962,966c950
  < > cleanEx()
  <
  < detaching 'package:multcomp'
  <
  < > nameEx("Transformations")
  ---
  > > cleanEx(); nameEx("Transformations")
  1125,1126c1109
  < > cleanEx()
  < > nameEx("alpha")
  ---
  > > cleanEx(); nameEx("alpha")
  1151,1152c1134
  < > cleanEx()
  < > nameEx("alzheimer")
  ---
  > > cleanEx(); nameEx("alzheimer")
  1186,1187c1168
  < > cleanEx()
  < > nameEx("asat")
  ---
  > > cleanEx(); nameEx("asat")
  1214,1215c1195
  < > cleanEx()
  < > nameEx("expectation-methods")
  ---
  > > cleanEx(); nameEx("expectation-methods")
  1299,1300c1279
  < > cleanEx()
  < > nameEx("glioma")
  ---
  > > cleanEx(); nameEx("glioma")
  1420,1421c1399
  < > cleanEx()
  < > nameEx("hohnloser")
  ---
  > > cleanEx(); nameEx("hohnloser")
  1450,1451c1428
  < > cleanEx()
  < > nameEx("jobsatisfaction")
  ---
  > > cleanEx(); nameEx("jobsatisfaction")
  1478,1479c1455
  < > cleanEx()
  < > nameEx("mercuryfish")
  ---
  > > cleanEx(); nameEx("mercuryfish")
  1546c1522
  < [1] 0.007140628
  ---
  > [1] 0.007050271
  1548c1524
  < 0.006371664 0.007909593
  ---
  > 0.006381220 0.007719323
  1554c1530
  < control 0.007991569 0.01726738 0.03830126
  ---
  > control 0.00719172 0.01726738 0.03836982
  1559,1560c1535
  < > cleanEx()
  < > nameEx("neuropathy")
  ---
  > > cleanEx(); nameEx("neuropathy")
  1609,1610c1584
  < > cleanEx()
  < > nameEx("ocarcinoma")
  ---
  > > cleanEx(); nameEx("ocarcinoma")
  1639,1640c1613
  < > cleanEx()
  < > nameEx("photocar")
  ---
  > > cleanEx(); nameEx("photocar")
  1687,1688c1660
  < > cleanEx()
  < > nameEx("pvalue-methods")
  ---
  > > cleanEx(); nameEx("pvalue-methods")
  1741,1742c1713
  < > cleanEx()
  < > nameEx("rotarod")
  ---
  > > cleanEx(); nameEx("rotarod")
  1789,1790c1760
  < > cleanEx()
  < > nameEx("sphase")
  ---
  > > cleanEx(); nameEx("sphase")
  1808c1778
  < maxT = 2.3966, p-value = 0.1588
  ---
  > maxT = 2.3966, p-value = 0.1591
  1823c1793
  < maxT = 2.4033, p-value = 0.1562
  ---
  > maxT = 2.4033, p-value = 0.1567
  1833,1834c1803
  < > cleanEx()
  < > nameEx("statistic-methods")
  ---
  > > cleanEx(); nameEx("statistic-methods")
  1891,1892c1860
  < > cleanEx()
  < > nameEx("treepipit")
  ---
  > > cleanEx(); nameEx("treepipit")
  1913c1881
  < maxT = 4.3139, p-value = 0.0006596
  ---
  > maxT = 4.3139, p-value = 0.0006695
  OK
• checking tests ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking PDF version of manual ... OK