• using log directory '/data/gannet/tmp/ripley/R/packages/tests-Sun/arulesSequences.Rcheck'
• using R version 2.11.0 Under development (unstable) (2010-02-03 r51097)
• using session charset: UTF-8
• checking for file 'arulesSequences/DESCRIPTION' ... OK
• this is package 'arulesSequences' version '0.1-8'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'arulesSequences' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... WARNING
  Missing link(s) in documentation object './man/timedsequences-class.Rd':
  ‘[arules:itemMatrix]{itemMatrix}’
  ‘[arules:transactions]{transactions}’
  
  See the information in section 'Cross-references' of the 'Writing R
  Extensions' manual.
  
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking tests ...
  Running ‘makebin.R’
  Comparing ‘makebin.Rout’ to ‘makebin.Rout.save’ ...7a8,15
  > Attaching package: 'Matrix'
  >
  >
  > The following object(s) are masked from package:stats :
  >
  > xtabs
  >
  >
  10c18,19
  < The following object(s) are masked from 'package:base':
  ---
  >
  > The following object(s) are masked from package:base :
  Running ‘similarity.R’
  Comparing ‘similarity.Rout’ to ‘similarity.Rout.save’ ...5a6,13
  > Attaching package: 'Matrix'
  >
  >
  > The following object(s) are masked from package:stats :
  >
  > xtabs
  >
  >
  8c16,17
  < The following object(s) are masked from 'package:base':
  ---
  >
  > The following object(s) are masked from package:base :
  Running ‘zaki.R’
  Comparing ‘zaki.Rout’ to ‘zaki.Rout.save’ ...5a6,13
  > Attaching package: 'Matrix'
  >
  >
  > The following object(s) are masked from package:stats :
  >
  > xtabs
  >
  >
  8c16,17
  < The following object(s) are masked from 'package:base':
  ---
  >
  > The following object(s) are masked from package:base :
  28,30c37
  < [1] "Attributes: < Component 4: names for current but not for target >"
  < [2] "Attributes: < Component 4: Attributes: < Component 2: Numeric: lengths (0, 10) differ > >"
  < [3] "Attributes: < Component 4: Length mismatch: comparison on first 0 components >"
  ---
  > [1] TRUE
  38,40d44
  < Note: Method with signature "numeric#character" chosen for function "coerce",
  < target signature "integer#character".
  < "ANY#character" would also be valid
  50,52c54,56
  < preprocessing ... 1 partition(s), 0 MB [0.11s]
  < mining transactions ... 0 MB [0.044s]
  < reading sequences ... [0.41s]
  ---
  > preprocessing ... 1 partition(s), 0 MB [0.4s]
  > mining transactions ... 0 MB [0.013s]
  > reading sequences ... [0.045s]
  54c58
  < total elapsed time: 0.56s
  ---
  > total elapsed time: 0.46s
  195c199
  < data frame with 0 columns and 0 rows
  ---
  > NULL data frame with 0 rows
  OK
• checking PDF version of manual ... OK
  
  WARNING: There was 1 warning, see
  /data/gannet/tmp/ripley/R/packages/tests-Sun/arulesSequences.Rcheck/00check.log
  for details
  
  Time 3:19.88, 122.80 + 8.94