• using log directory '/data/gannet/tmp/ripley/R/packages/tests-Sun/aroma.affymetrix.Rcheck'
• using R version 2.11.0 Under development (unstable) (2010-02-03 r51097)
• using session charset: UTF-8
• checking for file 'aroma.affymetrix/DESCRIPTION' ... OK
• this is package 'aroma.affymetrix' version '1.4.0'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'aroma.affymetrix' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  writeImages.SpatialReporter: possible error in writeImage(df, other =
  refFile, path = path, transforms = colorMap$transforms, palette =
  colorMap$palette, tags = tags, ..., verbose = less(verbose, 5)):
  unused argument(s) (other = refFile, path = path, transforms =
  colorMap$transforms, palette = colorMap$palette, tags = tags, verbose
  = less(verbose, 5))
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... WARNING
  Argument items with no description in Rd object 'GcRmaBackgroundCorrection':
  indicesNegativeControl affinities type opticalAdjust gsbAdjust
  gsbParameters
  
  Argument items with no description in Rd object 'ReseqCrosstalkCalibration':
  alpha, q, Q
  
• checking examples ... OK
• checking PDF version of manual ... OK
  
  WARNING: There was 1 warning, see
  /data/gannet/tmp/ripley/R/packages/tests-Sun/aroma.affymetrix.Rcheck/00check.log
  for details
  
  Time 5:50.58, 211.85 + 13.06