- using log directory '/data/gannet/tmp/ripley/R/packages/tests-Sun/AER.Rcheck'
- using R version 2.11.0 Under development (unstable) (2010-02-03 r51097)
- using session charset: UTF-8
- checking for file 'AER/DESCRIPTION' ... OK
- this is package 'AER' version '1.1-4'
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'AER' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the name space can be loaded with stated dependencies ... OK
- checking whether the name space can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking data for non-ASCII characters ... OK
- checking examples ... OK
- checking tests ...
Running ‘Ch-Basics.R’
Comparing ‘Ch-Basics.Rout’ to ‘Ch-Basics.Rout.save’ ...15a16,23
>
> Attaching package: 'zoo'
>
>
> The following object(s) are masked from package:base :
>
> as.Date.numeric
>
Running ‘Ch-Intro.R’
Comparing ‘Ch-Intro.Rout’ to ‘Ch-Intro.Rout.save’ ...15a16,23
>
> Attaching package: 'zoo'
>
>
> The following object(s) are masked from package:base :
>
> as.Date.numeric
>
99c107
< Package SparseM (0.83) loaded.
---
> Package SparseM (0.80) loaded.
105c113,114
< The following object(s) are masked from 'package:stats':
---
>
> The following object(s) are masked from package:stats :
109d117
< The following object(s) are masked from 'package:base':
111c119,122
< backsolve, chol, norm
---
> The following object(s) are masked from package:base :
>
> backsolve,
> chol
116d126
< The following object(s) are masked from 'package:survival':
118c128
< untangle.specials
---
> The following object(s) are masked from package:survival :
120,122c130
< The following object(s) are masked from 'package:utils':
<
< vignette
---
> untangle.specials
175c183
< KernSmooth 2.23 loaded
---
> KernSmooth 2.23 installed
234,239c242,246
< [11] "package:zoo" "package:Formula"
< [13] "package:car" "package:stats"
< [15] "package:graphics" "package:grDevices"
< [17] "package:utils" "package:datasets"
< [19] "package:methods" "Autoloads"
< [21] "package:base"
---
> [11] "package:zoo" "package:car"
> [13] "package:stats" "package:graphics"
> [15] "package:grDevices" "package:utils"
> [17] "package:datasets" "package:methods"
> [19] "Autoloads" "package:base"
Running ‘Ch-LinearRegression.R’
Comparing ‘Ch-LinearRegression.Rout’ to ‘Ch-LinearRegression.Rout.save’ ...15a16,23
>
> Attaching package: 'zoo'
>
>
> The following object(s) are masked from package:base :
>
> as.Date.numeric
>
122,123c130,131
< log(citeprice) 1 126 125.9 224 <2e-16
< Residuals 178 100 0.6
---
> log(citeprice) 1 125.9 125.9 224 <2e-16
> Residuals 178 100.1 0.6
209,210c217,218
< 1 178 100
< 2 179 100 -1 -0.484 0.86 0.35
---
> 1 178 100.1
> 2 179 100.5 -1 -0.5 0.86 0.35
312c320
< Residuals 28150 9599 0
---
> Residuals 28150 9599 0.34
451c459
< 2 28150 9599 -3 -16.8 16.5 1.1e-10
---
> 2 28150 9599 -3 -17 16.5 1.1e-10
750c758
< value 0.1049 0.0163 6.42 3.3e-08
---
> value 0.1049 0.0163 6.42 1.3e-10
798,799c806,807
< (Intercept) -109.9766 61.7014 -1.78 0.08
< value 0.1043 0.0150 6.95 3.8e-09
---
> (Intercept) -109.9766 61.7014 -1.78 0.075
> value 0.1043 0.0150 6.95 3.6e-12
887a896,913
>
> Attaching package: 'Matrix'
>
>
> The following object(s) are masked from package:stats :
>
> contr.SAS,
> contr.helmert,
> contr.poly,
> contr.sum,
> contr.treatment,
> xtabs
>
>
> The following object(s) are masked from package:base :
>
> rcond
>
Running ‘Ch-Microeconometrics.R’
Comparing ‘Ch-Microeconometrics.Rout’ to ‘Ch-Microeconometrics.Rout.save’ ...15a16,23
>
> Attaching package: 'zoo'
>
>
> The following object(s) are masked from package:base :
>
> as.Date.numeric
>
160,162d167
< The following object(s) are masked from 'package:car':
<
< logit
163a169
> The following object(s) are masked from package:car :
165,169c171
< Attaching package: 'gdata'
<
< The following object(s) are masked from 'package:utils':
<
< object.size
---
> logit
174c176,177
< The following object(s) are masked from 'package:stats':
---
>
> The following object(s) are masked from package:stats :
210c213,214
< glm.fit: fitted probabilities numerically 0 or 1 occurred
---
> In glm.fit(x = X, y = Y, weights = weights, start = start, etastart = etastart, :
> fitted probabilities numerically 0 or 1 occurred
238c242,243
< glm.fit: fitted probabilities numerically 0 or 1 occurred
---
> In glm.fit(x = X, y = Y, weights = weights, start = start, etastart = etastart, :
> fitted probabilities numerically 0 or 1 occurred
419,424c424
< Classes and Methods for R developed in the
< Political Science Computational Laboratory
< Department of Political Science
< Stanford University
< Simon Jackman
< hurdle and zeroinfl functions by Achim Zeileis
---
> pscl 1.03 2008-11-24
443,445d442
< Pearson residuals:
< Min 1Q Median 3Q Max
< -1.0889 -0.2004 -0.0570 -0.0451 40.0139
489,491d485
< Pearson residuals:
< Min 1Q Median 3Q Max
< -1.610 -0.207 -0.185 -0.164 12.111
Running ‘Ch-Programming.R’
Comparing ‘Ch-Programming.Rout’ to ‘Ch-Programming.Rout.save’ ...15a16,23
>
> Attaching package: 'zoo'
>
>
> The following object(s) are masked from package:base :
>
> as.Date.numeric
>
163c171,172
< The following object(s) are masked from 'package:lattice':
---
>
> The following object(s) are masked from package:lattice :
167c176,177
< The following object(s) are masked from 'package:survival':
---
>
> The following object(s) are masked from package:survival :
171c181,182
< The following object(s) are masked from 'package:car':
---
>
> The following object(s) are masked from package:car :
Running ‘Ch-TimeSeries.R’
Comparing ‘Ch-TimeSeries.Rout’ to ‘Ch-TimeSeries.Rout.save’ ...15a16,23
>
> Attaching package: 'zoo'
>
>
> The following object(s) are masked from package:base :
>
> as.Date.numeric
>
398,399c406,407
< black.d -0.0747230 0.00245321 2.69773e-17
< white.d 0.0201561 0.00353701 3.40157e-18
---
> black.d -0.0747230 0.00245321 -1.83608e-17
> white.d 0.0201561 0.00353701 5.55318e-18
Running ‘Ch-Validation.R’
Comparing ‘Ch-Validation.Rout’ to ‘Ch-Validation.Rout.save’ ...15a16,23
>
> Attaching package: 'zoo'
>
>
> The following object(s) are masked from package:base :
>
> as.Date.numeric
>
463c471
< Package SparseM (0.83) loaded.
---
> Package SparseM (0.80) loaded.
469c477,478
< The following object(s) are masked from 'package:stats':
---
>
> The following object(s) are masked from package:stats :
473d481
< The following object(s) are masked from 'package:base':
475c483,486
< backsolve, chol, norm
---
> The following object(s) are masked from package:base :
>
> backsolve,
> chol
480d490
< The following object(s) are masked from 'package:survival':
482c492
< untangle.specials
---
> The following object(s) are masked from package:survival :
484,486c494
< The following object(s) are masked from 'package:utils':
<
< vignette
---
> untangle.specials
OK
- checking package vignettes in 'inst/doc' ... OK
- checking PDF version of manual ... OK
Time 14:08.17, 531.93 + 14.73