• using R version 2.11.0 Under development (unstable) (2009-11-24 r50554)
• using session charset: UTF-8
• checking for file 'hsmm/DESCRIPTION' ... OK
• this is package 'hsmm' version '0.3-5'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'hsmm' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... ERROR
  Running examples in 'hsmm-Ex.R' failed.
  The error most likely occurred in:
  
  > ### * hsmm
  >
  > flush(stderr()); flush(stdout())
  >
  > ### Name: hsmm
  > ### Title: Hidden Semi-Markov Models
  > ### Aliases: hsmm
  > ### Keywords: ts
  >
  > ### ** Examples
  >
  >
  > # Simulating observations:
  > # (see hsmm.sim for details)
  > pipar <- rep(1/3, 3)
  > tpmpar <- matrix(c(0, 0.5, 0.5,
  + 0.7, 0, 0.3,
  + 0.8, 0.2, 0), 3, byrow = TRUE)
  > rdpar <- list(p = c(0.98, 0.98, 0.99))
  > odpar <- list(mean = c(-1.5, 0, 1.5), var=c(0.5, 0.6, 0.8))
  > sim <- hsmm.sim(n = 2000, od = "norm", rd = "log",
  + pi.par = pipar, tpm.par = tpmpar,
  + rd.par = rdpar, od.par = odpar, seed = 3539)
  >
  > # Executing the EM algorithm:
  > fit <- hsmm(sim$obs, od = "norm", rd = "log",
  + pi.par = pipar, tpm.par = tpmpar,
  + od.par = odpar, rd.par = rdpar)
  iter = 0
  LL = -2679.8735244075
  iter = 1
  LL = -2672.5701554768
  iter = 2
  LL = -2672.0704646245
  iter = 3
  LL = -2671.9150531947
  iter = 4
  LL = -2671.8564677665
  iter = 5
  LL = -2671.8298259249
  iter = 6
  LL = -2671.8159227696
  iter = 7
  LL = -2671.8078887270
  iter = 8
  LL = -2671.8028630557
  Error in FB(censoring, tau, J, M, FB.d, FB.p.tpm, FB.pi.ini, FB.pdf, F, :
  NA/NaN/Inf in foreign function call (arg 16)
  Calls: hsmm -> FB -> .C
  Execution halted