• using R version 2.11.0 Under development (unstable) (2010-01-14 r50981)
• using session charset: UTF-8
• checking for file 'clValid/DESCRIPTION' ... OK
• this is package 'clValid' version '0.5-7'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'clValid' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  BHI: no visible binding for global variable ‘GOENTREZID2GO’
  BHI: no visible global function definition for ‘biocLite’
  BSI: no visible binding for global variable ‘GOENTREZID2GO’
  BSI: no visible global function definition for ‘biocLite’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking package vignettes in 'inst/doc' ... NOTE
  *** PDFLaTeX Errors ***
  File /home/hornik/tmp/R.check/r-devel/Work/PKGS/clValid.Rcheck/inst/doc/clValid.Rnw :
  Running 'texi2dvi' on 'clValid.tex' failed.
  LaTeX errors:
  !pdfTeX error: pdflatex (file ./clValid-021.pdf): PDF inclusion: required page
  does not exist <0>
  ==> Fatal error occurred, no output PDF file produced!
• checking PDF version of manual ... OK