• using R version 2.11.0 Under development (unstable) (2010-01-14 r50981)
• using session charset: UTF-8
• checking for file 'Matrix/DESCRIPTION' ... OK
• this is package 'Matrix' version '0.999375-33'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'Matrix' can be installed ... WARNING
  Found the following significant warnings:
  Warning: in method for ‘coerce’ with signature ‘"matrix.csr","dgRMatrix"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"dgRMatrix","matrix.csr"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csc","dgCMatrix"’: no definition for class "matrix.csc"
  Warning: in method for ‘coerce’ with signature ‘"dgCMatrix","matrix.csc"’: no definition for class "matrix.csc"
  Warning: in method for ‘coerce’ with signature ‘"matrix.coo","dgTMatrix"’: no definition for class "matrix.coo"
  Warning: in method for ‘coerce’ with signature ‘"dgTMatrix","matrix.coo"’: no definition for class "matrix.coo"
  Warning: in method for ‘coerce’ with signature ‘"dsparseMatrix","matrix.csr"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csr","dgCMatrix"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"matrix.coo","dgCMatrix"’: no definition for class "matrix.coo"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csr","RsparseMatrix"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csc","CsparseMatrix"’: no definition for class "matrix.csc"
  Warning: in method for ‘coerce’ with signature ‘"matrix.coo","TsparseMatrix"’: no definition for class "matrix.coo"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csr","CsparseMatrix"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"matrix.coo","CsparseMatrix"’: no definition for class "matrix.coo"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csc","TsparseMatrix"’: no definition for class "matrix.csc"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csr","TsparseMatrix"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csr"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.coo"’: no definition for class "matrix.coo"
  Warning: in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csc"’: no definition for class "matrix.csc"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csr","Matrix"’: no definition for class "matrix.csr"
  Warning: in method for ‘coerce’ with signature ‘"matrix.coo","Matrix"’: no definition for class "matrix.coo"
  Warning: in method for ‘coerce’ with signature ‘"matrix.csc","Matrix"’: no definition for class "matrix.csc"
  Warning: in method for ‘colSums’ with signature ‘x="igCMatrix"’: no definition for class "igCMatrix"
  Warning: in method for ‘rowSums’ with signature ‘x="igCMatrix"’: no definition for class "igCMatrix"
  Warning: in method for ‘colMeans’ with signature ‘x="igCMatrix"’: no definition for class "igCMatrix"
  Warning: in method for ‘rowMeans’ with signature ‘x="igCMatrix"’: no definition for class "igCMatrix"
  Warning: in method for ‘coerce’ with signature ‘"graphAM","sparseMatrix"’: no definition for class "graphAM"
  Warning: in method for ‘coerce’ with signature ‘"graph","CsparseMatrix"’: no definition for class "graph"
  Warning: in method for ‘coerce’ with signature ‘"graphNEL","CsparseMatrix"’: no definition for class "graphNEL"
  Warning: in method for ‘coerce’ with signature ‘"graphNEL","TsparseMatrix"’: no definition for class "graphNEL"
  Warning: in method for ‘coerce’ with signature ‘"sparseMatrix","graph"’: no definition for class "graph"
  Warning: in method for ‘coerce’ with signature ‘"sparseMatrix","graphNEL"’: no definition for class "graphNEL"
  Warning: in method for ‘coerce’ with signature ‘"TsparseMatrix","graphNEL"’: no definition for class "graphNEL"
  See http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-gcc/Matrix-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Tsp2grNEL: no visible global function definition for ‘ftM2graphNEL’
  graph.has.weights: no visible global function definition for
  ‘edgeDataDefaults’
  graph.wgtMatrix: no visible global function definition for ‘numEdges’
  graph.wgtMatrix: no visible global function definition for ‘nodes’
  graph.wgtMatrix: no visible global function definition for
  ‘edgeDataDefaults’
  graph.wgtMatrix: no visible global function definition for ‘edgeData’
  coerce,graphAM-sparseMatrix: no visible global function definition for
  ‘edgemode’
  coerce,graphNEL-TsparseMatrix: no visible global function definition
  for ‘nodes’
  coerce,graphNEL-TsparseMatrix: no visible global function definition
  for ‘edgemode’
  coerce,graphNEL-TsparseMatrix: no visible global function definition
  for ‘edgeWeights’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking tests ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking PDF version of manual ... OK