- using R Under development (unstable) (2012-05-22 r59405)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘wavethresh/DESCRIPTION’ ... OK
- this is package ‘wavethresh’ version ‘4.5’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘wavethresh’ can be installed ... [15s/19s] OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
AvBasis.wst: warning in complex(real = aobj$answerR, im =
aobj$answerI): partial argument match of 'im' to 'imaginary'
GetRSSWST: warning in wst(odata, filter = filter.number, family =
family): partial argument match of 'filter' to 'filter.number'
GetRSSWST: warning in wst(edata, filter = filter.number, family =
family): partial argument match of 'filter' to 'filter.number'
LocalSpec.wd: warning in wd(v, filter = lw.number, family = lw.family):
partial argument match of 'filter' to 'filter.number'
LocalSpec.wd: warning in wd(v, filter = nlw.number, family =
nlw.family): partial argument match of 'filter' to 'filter.number'
compress.imwd: warning in compress.default(x[[nm]], ver = verbose):
partial argument match of 'ver' to 'verbose'
convert.wd: warning in wst(dummy, filter = wd$filter$filter.number,
family = wd$filter$family): partial argument match of 'filter' to
'filter.number'
convert.wd: warning in levarr(1:n, lev = nlevels(wd)): partial argument
match of 'lev' to 'levstodo'
convert.wst: warning in wd(dummy, type = "station", filter =
wst$filter$filter.number, family = wst$filter$family): partial
argument match of 'filter' to 'filter.number'
convert.wst: warning in levarr(1:n, lev = nlevels(wst)): partial
argument match of 'lev' to 'levstodo'
draw.imwd: warning in draw.default(filter.number =
filter$filter.number, family = filter$family, dim = 2, resolution =
resolution, ...): partial argument match of 'dim' to 'dimension'
draw.imwdc: warning in draw.default(filter.number =
filter$filter.number, family = filter$family, dim = 2, resolution =
resolution, ...): partial argument match of 'dim' to 'dimension'
irregwd: warning in complex(real = wavelet.decomposition$CR, im =
wavelet.decomposition$CI): partial argument match of 'im' to
'imaginary'
irregwd: warning in complex(real = wavelet.decomposition$DR, im =
wavelet.decomposition$DI): partial argument match of 'im' to
'imaginary'
makewpstDO: warning in wpst2discr(wpst = twpst, groups = groups):
partial argument match of 'wpst' to 'wpstobj'
makewpstRO: warning in wpst2m(wpst = twpst, trans = trans): partial
argument match of 'wpst' to 'wpstobj'
plot.irregwd: warning in signif(xlabels[axx], dig = 3): partial
argument match of 'dig' to 'digits'
plot.wd: warning in signif(lx, dig = 2): partial argument match of
'dig' to 'digits'
plotdenwd: warning in signif(lx, dig = 2): partial argument match of
'dig' to 'digits'
rmget: warning in objects(name = sl[i], pat = ps): partial argument
match of 'pat' to 'pattern'
rsswav: warning in wd(oodd, filter = filter.number, family = family):
partial argument match of 'filter' to 'filter.number'
rsswav: warning in wd(oeven, filter = filter.number, family = family):
partial argument match of 'filter' to 'filter.number'
rsswav: warning in wd(noisy, filter = filter.number, family = family):
partial argument match of 'filter' to 'filter.number'
uncompress.imwdc: warning in uncompress.default(x[[nm]], ver =
verbose): partial argument match of 'ver' to 'verbose'
wavegrow: warning in wd(v, filter = filter.number, family = family,
type = type): partial argument match of 'filter' to 'filter.number'
wd: warning in complex(real = wavelet.decomposition$CR, im =
wavelet.decomposition$CI): partial argument match of 'im' to
'imaginary'
wd: warning in complex(real = wavelet.decomposition$DR, im =
wavelet.decomposition$DI): partial argument match of 'im' to
'imaginary'
wpst2m: warning in compgrot(J, filter = wpstobj$filter$filter.number,
family = wpstobj$filter$family): partial argument match of 'filter'
to 'filter.number'
wr.wd: warning in complex(real = wavelet.reconstruction$CR, im =
wavelet.reconstruction$CI): partial argument match of 'im' to
'imaginary'
wr.wd: warning in complex(real = wavelet.reconstruction$DR, im =
wavelet.reconstruction$DI): partial argument match of 'im' to
'imaginary'
wst: warning in complex(real = wavelet.station$newdataR, im =
wavelet.station$newdataI): partial argument match of 'im' to
'imaginary'
wst: warning in complex(real = wavelet.station$CaR, im =
wavelet.station$CaI): partial argument match of 'im' to 'imaginary'
wstCV: warning in GetRSSWST(ndata, thresh = ax, levels = levels, type =
type, filter.number = filter.number, family = family, norm = norm,
verbose = verbose, InverseType = InverseType): partial argument match
of 'thresh' to 'threshold'
wstCV: warning in GetRSSWST(ndata, thresh = bx, levels = levels, type =
type, filter.number = filter.number, family = family, norm = norm,
verbose = verbose, InverseType = InverseType): partial argument match
of 'thresh' to 'threshold'
wstCV: warning in GetRSSWST(ndata, thresh = cx, levels = levels, type =
type, filter.number = filter.number, family = family, norm = norm,
verbose = verbose, InverseType = InverseType): partial argument match
of 'thresh' to 'threshold'
wstCV: warning in GetRSSWST(ndata, thresh = x1, levels = levels, type =
type, filter.number = filter.number, family = family, norm = norm,
verbose = verbose, InverseType = InverseType): partial argument match
of 'thresh' to 'threshold'
wstCV: warning in GetRSSWST(ndata, thresh = x2, levels = levels, type =
type, filter.number = filter.number, family = family, norm = norm,
verbose = verbose, InverseType = InverseType): partial argument match
of 'thresh' to 'threshold'
wvmoments: warning in draw.default(filter.number = filter.number,
family = family, plot.it = FALSE, enhance = FALSE, res = 32768,
scaling.function = scaling.function): partial argument match of 'res'
to 'resolution'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... WARNING
File ‘/data/gannet/tmp/ripley/R/packages/tests-devel/wavethresh.Rcheck/wavethresh/libs/wavethresh.so’:
Found ‘exit’, possibly from ‘exit’ (C)
Objects: ‘WAVDE.o’, ‘functions.o’
Found ‘printf’, possibly from ‘printf’ (C)
Objects: ‘WAVDE.o’, ‘functions.o’
Found ‘putchar’, possibly from ‘putchar’ (C)
Objects: ‘WAVDE.o’, ‘functions.o’
Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
Objects: ‘WAVDE.o’, ‘functions.o’
Found ‘stderr’, possibly from ‘stderr’ (C)
Objects: ‘WAVDE.o’, ‘functions.o’
Found ‘stdout’, possibly from ‘stdout’ (C)
Object: ‘functions.o’
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking examples ... [19s/26s] OK
- checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There was 1 note.
See
‘/data/gannet/tmp/ripley/R/packages/tests-devel/wavethresh.Rcheck/00check.log’
for details.