• using R Under development (unstable) (2012-08-14 r60253)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘swamp/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘swamp’ version ‘1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘swamp’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  hca.plot: warning in layout(c(1, 2), height = c(1, dim(oreihe)[2]/10)):
  partial argument match of 'height' to 'heights'
• checking Rd files ... NOTE
  prepare_Rd: confounding.Rd:67: Dropping empty section \references
  prepare_Rd: confounding.Rd:73-74: Dropping empty section \seealso
  prepare_Rd: corrected.p.Rd:41: Dropping empty section \note
  prepare_Rd: corrected.p.Rd:39: Dropping empty section \references
  prepare_Rd: corrected.p.Rd:43: Dropping empty section \seealso
  prepare_Rd: dense.plot.Rd:34: Dropping empty section \value
  prepare_Rd: dense.plot.Rd:37: Dropping empty section \note
  prepare_Rd: dense.plot.Rd:35: Dropping empty section \references
  prepare_Rd: dense.plot.Rd:39: Dropping empty section \seealso
  prepare_Rd: feature.assoc.Rd:48: Dropping empty section \note
  prepare_Rd: feature.assoc.Rd:46: Dropping empty section \references
  prepare_Rd: feature.assoc.Rd:50-51: Dropping empty section \seealso
  prepare_Rd: hca.plot.Rd:41-42: Dropping empty section \value
  prepare_Rd: hca.plot.Rd:43-44: Dropping empty section \references
  prepare_Rd: hca.plot.Rd:51-52: Dropping empty section \seealso
  prepare_Rd: hca.test.Rd:43-44: Dropping empty section \references
  prepare_Rd: hca.test.Rd:50-51: Dropping empty section \seealso
  prepare_Rd: kill.pc.Rd:28-29: Dropping empty section \references
  prepare_Rd: kill.pc.Rd:35-36: Dropping empty section \seealso
  prepare_Rd: prince.Rd:58: Dropping empty section \references
  prepare_Rd: prince.Rd:62: Dropping empty section \seealso
  prepare_Rd: prince.plot.Rd:52: Dropping empty section \value
  prepare_Rd: prince.plot.Rd:53: Dropping empty section \references
  prepare_Rd: prince.plot.Rd:57: Dropping empty section \seealso
  prepare_Rd: prince.var.plot.Rd:36: Dropping empty section \references
  prepare_Rd: prince.var.plot.Rd:40: Dropping empty section \seealso
  prepare_Rd: quickadjust.ref.Rd:34-35: Dropping empty section \note
  prepare_Rd: quickadjust.ref.Rd:31: Dropping empty section \references
  prepare_Rd: quickadjust.ref.Rd:37-38: Dropping empty section \seealso
  prepare_Rd: quickadjust.zero.Rd:27-28: Dropping empty section \note
  prepare_Rd: quickadjust.zero.Rd:23-24: Dropping empty section \references
  prepare_Rd: quickadjust.zero.Rd:29-30: Dropping empty section \seealso
  prepare_Rd: swamp-package.Rd:35: Dropping empty section \references
  prepare_Rd: swamp-package.Rd:38: Dropping empty section \seealso
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [11s/11s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/swamp.Rcheck/00check.log’
  for details.