• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘svcm/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘svcm’ version ‘0.1.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘svcm’ can be installed ... [10s/14s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  EDofTP: warning in assign("ED", ED, env = svcm.env): partial argument
  match of 'env' to 'envir'
  predictsvcm: warning in assign("S", S, env = svcm.env): partial
  argument match of 'env' to 'envir'
  predictsvcm: warning in assign("A", as.vector(A), env = svcm.env):
  partial argument match of 'env' to 'envir'
  predictsvcm: warning in assign("eta", eta, env = svcm.env): partial
  argument match of 'env' to 'envir'
  predictsvcm: warning in assign("A", A, env = svcm.env): partial
  argument match of 'env' to 'envir'
  predictsvcm: warning in assign("ED", ED, env = svcm.env): partial
  argument match of 'env' to 'envir'
  targetsvcm: warning in assign("GCVtab", rbind(GCVtab, c(lambda, GCV)),
  env = svcm.env): partial argument match of 'env' to 'envir'
  EDofTP: no visible binding for global variable ‘S’
  EDofTP: no visible binding for global variable ‘BB’
  EDofTP: no visible binding for global variable ‘svcm.env’
  predictsvcm: no visible binding for global variable ‘P.whole’
  predictsvcm: no visible binding for global variable ‘ndims’
  predictsvcm: no visible binding for global variable ‘P.x’
  predictsvcm: no visible binding for global variable ‘P.y’
  predictsvcm: no visible binding for global variable ‘P.z’
  predictsvcm: no visible binding for global variable ‘BB’
  predictsvcm: no visible binding for global variable ‘svcm.env’
  predictsvcm: no visible binding for global variable ‘RHS’
  predictsvcm: no visible binding for global variable ‘B’
  predictsvcm: no visible binding for global variable ‘LS.X’
  predictsvcm: no visible binding for global variable ‘Y’
  predictsvcm: no visible binding for global variable ‘X’
  predictsvcm: no visible binding for global variable ‘BB.x’
  predictsvcm: no visible binding for global variable ‘B.x’
  predictsvcm: no visible binding for global variable ‘BB.y’
  predictsvcm: no visible binding for global variable ‘B.y’
  predictsvcm: no visible binding for global variable ‘BB.z’
  predictsvcm: no visible binding for global variable ‘B.z’
  targetsvcm: no visible binding for global variable ‘type’
  targetsvcm: no visible binding for global variable ‘n’
  targetsvcm: no visible binding for global variable ‘y’
  targetsvcm: no visible binding for global variable ‘eta’
  targetsvcm: no visible binding for global variable ‘ED’
  targetsvcm: no visible binding for global variable ‘Y’
  targetsvcm: no visible binding for global variable ‘GCVtab’
  targetsvcm: no visible binding for global variable ‘svcm.env’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [14s/21s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [9s/14s] OK
  Running ‘svcm3d.R’ [8s/13s]
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/svcm.Rcheck/00check.log’
  for details.