• using R Under development (unstable) (2012-02-07 r58290)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘survey/DESCRIPTION’ ... OK
• this is package ‘survey’ version ‘3.28’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘survey’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  biplot.svyprcomp: warning in rgb(rgbcol[1, ], rgbcol[2, ], rgbcol[3, ],
  alpha = pmax(1, 255 * w * max.alpha/max(w)), max = 255): partial
  argument match of 'max' to 'maxColorValue'
  svyplot.default: no visible global function definition for ‘hcell’
  svyplot.default: warning in hexbin(X, Y, ID = TRUE, xbins = xbins):
  partial argument match of 'ID' to 'IDs'
  twophase2: warning in svydesign(id = id[[1]], strata = strata[[1]],
  weights = NULL, probs = probs[[1]], fpc = fpc[[1]], data = data):
  partial argument match of 'id' to 'ids'
  twophase2: warning in svydesign(id = id[[1]], strata = strata[[1]],
  weights = NULL, probs = probs[[1]], fpc = fpc[[1]], data =
  data[subset, ]): partial argument match of 'id' to 'ids'
  twophase2: warning in svydesign(id = id[[2]], strata = strata[[2]],
  data = data, probs = NULL): partial argument match of 'id' to 'ids'
  twophase2: warning in svydesign(id = id[[2]], strata = strata[[2]],
  probs = probs[[2]], weights = NULL, fpc = fpc[[2]], data =
  data[subset, ]): partial argument match of 'id' to 'ids'
• checking Rd files ... NOTE
  prepare_Rd: SE.Rd:25-27: Dropping empty section \examples
  prepare_Rd: as.fpc.Rd:33-35: Dropping empty section \examples
  prepare_Rd: as.svydesign2.Rd:31-33: Dropping empty section \examples
  prepare_Rd: dimnames.DBIsvydesign.Rd:44-45: Dropping empty section \examples
  prepare_Rd: marginpred.Rd:41-43: Dropping empty section \references
  prepare_Rd: svrVar.Rd:32-34: Dropping empty section \examples
  prepare_Rd: svyCprod.Rd:99-100: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [58s/78s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [74s/105s] OK
  Running ‘DBIcheck.R’
  Comparing ‘DBIcheck.Rout’ to ‘DBIcheck.Rout.save’ ... OK
  Running ‘api.R’
  Comparing ‘api.Rout’ to ‘api.Rout.save’ ... OK
  Running ‘bycovmat.R’
  Running ‘caleg.R’
  Comparing ‘caleg.Rout’ to ‘caleg.Rout.save’ ... OK
  Running ‘check.R’
  Comparing ‘check.Rout’ to ‘check.Rout.save’ ... OK
  Running ‘deff.R’
  Comparing ‘deff.Rout’ to ‘deff.Rout.save’ ... OK
  Running ‘domain.R’
  Comparing ‘domain.Rout’ to ‘domain.Rout.save’ ... OK
  Running ‘fpc.R’
  Comparing ‘fpc.Rout’ to ‘fpc.Rout.save’ ... OK
  Running ‘kalton.R’
  Comparing ‘kalton.Rout’ to ‘kalton.Rout.save’ ... OK
  Running ‘lonely.psu.R’
  Comparing ‘lonely.psu.Rout’ to ‘lonely.psu.Rout.save’ ... OK
  Running ‘multistage.R’
  Comparing ‘multistage.Rout’ to ‘multistage.Rout.save’ ... OK
  Running ‘nwts-cch.R’ [10s/15s]
  Comparing ‘nwts-cch.Rout’ to ‘nwts-cch.Rout.save’ ... OK
  Running ‘nwts.R’ [10s/14s]
  Comparing ‘nwts.Rout’ to ‘nwts.Rout.save’ ... OK
  Running ‘pps.R’
  Comparing ‘pps.Rout’ to ‘pps.Rout.save’ ... OK
  Running ‘quantile.R’
  Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK
  Running ‘rakecheck.R’
  Comparing ‘rakecheck.Rout’ to ‘rakecheck.Rout.save’ ...64c64
  < NA's :37 NA's :13 NA's :1 NA's :12
  ---
  > NA's :37.0000 NA's :13 NA's :1 NA's :12
  Running ‘raowuboot.R’
  Running ‘regpredict.R’
  Comparing ‘regpredict.Rout’ to ‘regpredict.Rout.save’ ... OK
  Running ‘scoping.R’
  Running ‘survcurve.R’ [14s/19s]
  Comparing ‘survcurve.Rout’ to ‘survcurve.Rout.save’ ... OK
  Running ‘twophase.R’ [9s/12s]
  Comparing ‘twophase.Rout’ to ‘twophase.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [40s/53s] OK
• checking re-building of vignette PDFs ... [31s/59s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/survey.Rcheck/00check.log’
  for details.