• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘signalextraction/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘signalextraction’ version ‘2.0.3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘signalextraction’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘signalextraction/R/zzz.R’:
  .onAttach calls:
  require(tcltk, quiet = TRUE)
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in ?.onAttach.
  
  .onAttach: warning in require(tcltk, quiet = TRUE): partial argument
  match of 'quiet' to 'quietly'
  dfa: warning in complex(arg = j * (0:lsf) * 2 * pi/n.pg): partial
  argument match of 'arg' to 'argument'
  .onAttach: no visible binding for '<<-' assignment to
  ‘set.dfa.parameters’
  .onAttach : <anonymous> : OnOK: no visible binding for '<<-' assignment
  to ‘out’
  dfa: no visible binding for global variable ‘tff1’
  dfa: no visible binding for global variable ‘z’
  dfa: no visible binding for global variable ‘zbar’
  dfa: no visible binding for global variable ‘p’
  dfa: no visible binding for global variable ‘pbar’
  dfa: no visible binding for global variable ‘amp’
  dfa: no visible binding for global variable ‘pha’
  funcret: no visible binding for '<<-' assignment to ‘z’
  funcret: no visible binding for '<<-' assignment to ‘zbar’
  funcret: no visible binding for '<<-' assignment to ‘p’
  funcret: no visible binding for '<<-' assignment to ‘pbar’
  funcret: no visible binding for global variable ‘z’
  funcret: no visible binding for global variable ‘p’
  funcret: no visible binding for global variable ‘zbar’
  funcret: no visible binding for global variable ‘pbar’
  funcret: no visible binding for '<<-' assignment to ‘tff1’
  funcret: no visible binding for global variable ‘tff1’
  funcret: no visible binding for '<<-' assignment to ‘amp’
  funcret: no visible binding for global variable ‘amp’
  funcret: no visible binding for '<<-' assignment to ‘pha’
  funcret: no visible binding for global variable ‘pha’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files look like leftovers/mistakes:
  ‘tutorial.aux’, ‘tutorial.log’
  Please remove them from your package.
  The following files should probably not be installed:
  ‘tutorial.tex’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/signalextraction.Rcheck/00check.log’
  for details.