- using R Under development (unstable) (2012-05-22 r59405)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘rggobi/DESCRIPTION’ ... OK
- this is package ‘rggobi’ version ‘2.1.17’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘rggobi’ can be installed ... [17s/34s] OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
edges<-.GGobi: no visible global function definition for ‘nodes’
edges<-.GGobi: no visible global function definition for ‘edgeMatrix’
edges<-.GGobiData: no visible global function definition for ‘nodes’
edges<-.GGobiData: no visible global function definition for
‘edgeMatrix’
ggobi_pcp: no visible binding for global variable ‘CASEID’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... WARNING
Undocumented S4 classes:
‘GGobiData’
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object '"as.data.frame.GGobiData"':
‘as.data.frame.GGobiData’
S3 methods shown with full name in documentation object 'close.GGobi':
‘close.GGobi’
S3 methods shown with full name in documentation object 'close.GGobiDisplay':
‘close.GGobiDisplay’
S3 methods shown with full name in documentation object 'dataset.GGobiDisplay':
‘dataset.GGobiDisplay’
S3 methods shown with full name in documentation object 'dataset.numeric':
‘dataset.numeric’
S3 methods shown with full name in documentation object 'dim.GGobiData':
‘dim.GGobiData’
S3 methods shown with full name in documentation object '"dimnames<-.GGobiData"':
‘dimnames<-.GGobiData’
S3 methods shown with full name in documentation object 'dimnames.GGobiData':
‘dimnames.GGobiData’
S3 methods shown with full name in documentation object 'display.GGobiData':
‘display.GGobiData’
S3 methods shown with full name in documentation object 'displays.GGobi':
‘displays.GGobi’
S3 methods shown with full name in documentation object '"edges<-.GGobi"':
‘edges<-.GGobi’
S3 methods shown with full name in documentation object '"edges<-.GGobiData"':
‘edges<-.GGobiData’
S3 methods shown with full name in documentation object '"edges<-.GGobiDisplay"':
‘edges<-.GGobiDisplay’
S3 methods shown with full name in documentation object '"excluded<-.GGobiData"':
‘excluded<-.GGobiData’
S3 methods shown with full name in documentation object 'excluded.GGobiData':
‘excluded.GGobiData’
S3 methods shown with full name in documentation object '"[.GGobi"':
‘[.GGobi’
S3 methods shown with full name in documentation object '"[.GGobiData"':
‘[.GGobiData’
S3 methods shown with full name in documentation object 'ggobi.GGobiDisplay':
‘ggobi.GGobiDisplay’
S3 methods shown with full name in documentation object 'ggobi.default':
‘ggobi.default’
S3 methods shown with full name in documentation object '"glyph_colour<-.GGobiData"':
‘glyph_colour<-.GGobiData’
S3 methods shown with full name in documentation object 'glyph_colour.GGobiData':
‘glyph_colour.GGobiData’
S3 methods shown with full name in documentation object '"glyph_size<-.GGobiData"':
‘glyph_size<-.GGobiData’
S3 methods shown with full name in documentation object 'glyph_size.GGobiData':
‘glyph_size.GGobiData’
S3 methods shown with full name in documentation object '"glyph_type<-.GGobiData"':
‘glyph_type<-.GGobiData’
S3 methods shown with full name in documentation object 'glyph_type.GGobiData':
‘glyph_type.GGobiData’
S3 methods shown with full name in documentation object '"ids<-.GGobiData"':
‘ids<-.GGobiData’
S3 methods shown with full name in documentation object 'ids.GGobiData':
‘ids.GGobiData’
S3 methods shown with full name in documentation object 'length.GGobiDisplay':
‘length.GGobiDisplay’
S3 methods shown with full name in documentation object '"names<-.GGobiData"':
‘names<-.GGobiData’
S3 methods shown with full name in documentation object 'names.GGobi':
‘names.GGobi’
S3 methods shown with full name in documentation object 'names.GGobiData':
‘names.GGobiData’
S3 methods shown with full name in documentation object 'print.GGobi':
‘print.GGobi’
S3 methods shown with full name in documentation object 'print.GGobiData':
‘print.GGobiData’
S3 methods shown with full name in documentation object 'print.GGobiDisplay':
‘print.GGobiDisplay’
S3 methods shown with full name in documentation object 'selected.GGobiData':
‘selected.GGobiData’
S3 methods shown with full name in documentation object '"[<-.GGobi"':
‘[<-.GGobi’
S3 methods shown with full name in documentation object '"[<-.GGobiData"':
‘[<-.GGobiData’
S3 methods shown with full name in documentation object '"shadowed<-.GGobiData"':
‘shadowed<-.GGobiData’
S3 methods shown with full name in documentation object 'shadowed.GGobiData':
‘shadowed.GGobiData’
S3 methods shown with full name in documentation object 'summary.GGobi':
‘summary.GGobi’
S3 methods shown with full name in documentation object 'summary.GGobiData':
‘summary.GGobiData’
S3 methods shown with full name in documentation object '"variables<-.GGobiDisplay"':
‘variables<-.GGobiDisplay’
S3 methods shown with full name in documentation object 'variables.GGobiDisplay':
‘variables.GGobiDisplay’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... WARNING
‘data(package=)’ call not declared from: ‘nlme’
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... ERROR
Running examples in ‘rggobi-Ex.R’ failed
The error most likely occurred in:
> ### Name: ggobi_longitudinal
> ### Title: Create longitudinal dataset.
> ### Aliases: ggobi_longitudinal
> ### Keywords: dynamic
>
> ### ** Examples
> data(Oxboys, package="nlme")
Error in find.package(package, lib.loc, verbose = verbose) :
there is no package called ‘nlme’
Calls: data -> find.package
Execution halted