• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘refund/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘refund’ version ‘0.1-5’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... WARNING
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking whether package ‘refund’ can be installed ... [10s/12s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... WARNING
  pffr: warning in eval(responsename, env = evalenv, enclos = frmlenv):
  partial argument match of 'env' to 'envir'
  pffr: warning in eval(ffcall$yind, env = evalenv, enclos = frmlenv):
  partial argument match of 'env' to 'envir'
  pffr : <anonymous>: warning in eval(x, env = evalenv, enclos =
  frmlenv): partial argument match of 'env' to 'envir'
  pffr: no visible binding for global variable ‘sff’
  pffr: no visible binding for global variable ‘intcall’
  Found .Internal call in the following function:
  ‘expand.call’
  with calls to .Internal functions
  ‘match.call’
  
  Packages should not call .Internal(): it is not part of the API, for
  use only by R itself and subject to change without notice.
• checking Rd files ... NOTE
  prepare_Rd: amc.Rd:28-30: Dropping empty section \details
  prepare_Rd: amc.Rd:44-46: Dropping empty section \note
  prepare_Rd: amc.Rd:38-40: Dropping empty section \references
  prepare_Rd: amc.Rd:53-54: Dropping empty section \examples
  prepare_Rd: fosr.Rd:69-71: Dropping empty section \note
  prepare_Rd: fosr.perm.Rd:59-61: Dropping empty section \details
  prepare_Rd: fosr.perm.Rd:82-84: Dropping empty section \note
  prepare_Rd: fpcr.Rd:68-70: Dropping empty section \note
  prepare_Rd: fpcr.Rd:74-76: Dropping empty section \seealso
  prepare_Rd: lofocv.Rd:30-32: Dropping empty section \details
  prepare_Rd: lofocv.Rd:42-44: Dropping empty section \note
  prepare_Rd: lofocv.Rd:36-38: Dropping empty section \references
  prepare_Rd: lofocv.Rd:51-52: Dropping empty section \examples
  prepare_Rd: plot.fosr.Rd:30-32: Dropping empty section \details
  prepare_Rd: plot.fosr.Rd:33-34: Dropping empty section \value
  prepare_Rd: plot.fosr.Rd:40-42: Dropping empty section \note
  prepare_Rd: plot.fosr.Rd:35-37: Dropping empty section \references
  prepare_Rd: plot.fpcr.Rd:25: Dropping empty section \details
  prepare_Rd: plot.fpcr.Rd:34-36: Dropping empty section \note
  prepare_Rd: plot.fpcr.Rd:42: Dropping empty section \examples
  prepare_Rd: pwcv.Rd:46-48: Dropping empty section \note
  prepare_Rd: refund-package.Rd:48-49: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [104s/165s] OK
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings.
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/refund.Rcheck/00check.log’
  for details.