• using R Under development (unstable) (2012-08-14 r60253)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘rconifers/DESCRIPTION’ ... OK
• this is package ‘rconifers’ version ‘1.0.7’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘rconifers’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking differences from ‘rconifers-Ex.Rout’ to ‘rconifers-Ex.Rout.save’ ...
  0a1
  > > options(pager = "console")
  555,556c556,557
  < 1 1 PP 4.80 2.91 11.50 0.852 1 100.00 7.5500 0
  < 2 1 DF 2.08 0.61 7.08 0.845 1 100.00 4.4000 0
  ---
  > 1 1 DF 2.08 0.61 7.08 0.845 1 100.00 4.4000 0
  > 2 1 PP 4.80 2.91 11.50 0.852 1 100.00 7.5500 0
  2291c2292
  < max sdi = 402.3
  ---
  > max sdi = 400.8
  2293,2299c2294,2300
  < CEIN 0.000 8.891 0.000 250.0 250.0
  < COCO 0.000 10.546 0.000 825.0 825.0
  < DF 3.293 28.095 25.132 425.0 425.0
  < IC 1.210 7.571 1.797 225.0 500.0
  < PM 5.042 33.800 90.114 650.0 650.0
  < PP 9.870 37.779 53.129 100.0 100.0
  < WF 2.072 6.895 5.286 225.7 275.7
  ---
  > CEIN 0.000 8.830 0.000 250.0 250.0
  > COCO 0.000 10.524 0.000 825.0 825.0
  > DF 3.555 29.436 29.298 425.0 425.0
  > IC 0.997 8.105 1.491 275.0 500.0
  > PM 4.977 34.038 87.805 650.0 650.0
  > PP 10.577 41.186 61.015 100.0 100.0
  > WF 2.087 7.601 5.362 225.7 275.7
  2309c2310
  < max sdi = 402.3
  ---
  > max sdi = 400.8
  2311,2317c2312,2318
  < CEIN 0.000 8.891 0.000 250.0 250.0
  < COCO 0.000 10.546 0.000 825.0 825.0
  < DF 3.293 28.095 25.132 425.0 425.0
  < IC 1.210 7.571 1.797 225.0 500.0
  < PM 5.042 33.800 90.114 650.0 650.0
  < PP 9.870 37.779 53.129 100.0 100.0
  < WF 2.072 6.895 5.286 225.7 275.7
  ---
  > CEIN 0.000 8.830 0.000 250.0 250.0
  > COCO 0.000 10.524 0.000 825.0 825.0
  > DF 3.555 29.436 29.298 425.0 425.0
  > IC 0.997 8.105 1.491 275.0 500.0
  > PM 4.977 34.038 87.805 650.0 650.0
  > PP 10.577 41.186 61.015 100.0 100.0
  > WF 2.087 7.601 5.362 225.7 275.7
  2752c2753
  < max sdi = 398.8
  ---
  > max sdi = 398.6
  2754,2760c2755,2761
  < CEIN 0.000 8.754 0.0000 250.0 250.0
  < COCO 0.000 10.607 0.0000 825.0 825.0
  < DF 3.133 27.761 22.7567 425.0 425.0
  < IC 1.059 6.102 0.9174 150.0 500.0
  < PM 5.021 33.929 89.3666 650.0 650.0
  < PP 10.524 40.061 60.4072 100.0 100.0
  < WF 2.531 5.420 5.2677 150.7 275.7
  ---
  > CEIN 0.000 8.736 0.0000 250.0 250.0
  > COCO 0.000 10.610 0.0000 825.0 825.0
  > DF 3.123 27.847 22.6072 425.0 425.0
  > IC 1.021 6.046 0.8536 150.0 500.0
  > PM 5.019 33.925 89.3221 650.0 650.0
  > PP 10.554 40.103 60.7530 100.0 100.0
  > WF 2.529 5.417 5.2581 150.7 275.7
  2774c2775
  < max sdi = 392.6
  ---
  > max sdi = 392.4
  2776,2782c2777,2783
  < CEIN 0.000 8.754 0.0000 250.00 250.00
  < COCO 0.000 10.607 0.0000 825.00 825.00
  < DF 6.049 41.988 10.1687 50.96 50.96
  < IC 1.059 6.102 0.9174 150.00 500.00
  < PM 5.021 33.929 89.3666 650.00 650.00
  < PP 10.524 40.061 60.4072 100.00 100.00
  < WF 2.531 5.420 5.2677 150.74 275.74
  ---
  > CEIN 0.000 8.736 0.0000 250.00 250.00
  > COCO 0.000 10.610 0.0000 825.00 825.00
  > DF 6.029 41.907 10.1032 50.96 50.96
  > IC 1.021 6.046 0.8536 150.00 500.00
  > PM 5.019 33.925 89.3221 650.00 650.00
  > PP 10.554 40.103 60.7530 100.00 100.00
  > WF 2.529 5.417 5.2581 150.74 275.74
  2794c2795
  < max sdi = 390.1
  ---
  > max sdi = 390
  2796,2802c2797,2803
  < CEIN 0.000 8.754 0.00000 250.000 250.000
  < COCO 0.000 10.607 0.00000 825.000 825.000
  < DF 6.192 43.531 3.18318 15.223 15.223
  < IC 1.247 11.935 0.06525 7.694 11.764
  < PM 4.848 33.732 2.05878 16.061 16.061
  < PP 11.224 42.679 8.88459 12.931 12.931
  < WF 3.773 6.613 0.35957 4.631 6.085
  ---
  > CEIN 0.000 8.736 0.00000 250.000 250.000
  > COCO 0.000 10.610 0.00000 825.000 825.000
  > DF 6.203 43.671 3.19440 15.223 15.223
  > IC 1.203 11.772 0.06071 7.694 11.764
  > PM 4.841 33.714 2.05294 16.061 16.061
  > PP 11.235 42.745 8.90282 12.931 12.931
  > WF 3.773 6.689 0.35952 4.631 6.085
  2814c2815
  < max sdi = 380.6
  ---
  > max sdi = 380.3
  2816,2817c2817,2818
  < CEIN 0.000 8.754 0.000 250.00 250.00
  < COCO 0.000 10.607 0.000 825.00 825.00
  ---
  > CEIN 0.00 8.736 0.000 250.00 250.00
  > COCO 0.00 10.610 0.000 825.00 825.00
  2820,2822c2821,2823
  < PM 5.451 35.205 12.153 75.00 75.00
  < PP 11.634 43.568 28.230 38.24 38.24
  < WF 35.200 78.068 5.001 0.74 0.74
  ---
  > PM 5.45 35.205 12.152 75.00 75.00
  > PP 11.73 44.270 28.686 38.24 38.24
  > WF 35.20 78.078 5.001 0.74 0.74
  2835c2836
  < max sdi = 392.4
  ---
  > max sdi = 392.1
  2837,2843c2838,2844
  < CEIN 0.000 8.754 0.0000 250.0 250.0
  < COCO 0.000 10.607 0.0000 825.0 825.0
  < DF 3.133 27.761 22.7567 425.0 425.0
  < IC 1.059 6.102 0.9174 150.0 500.0
  < PM 5.209 34.656 16.6499 112.5 112.5
  < PP 10.524 40.061 60.4072 100.0 100.0
  < WF 2.531 5.420 5.2677 150.7 275.7
  ---
  > CEIN 0.000 8.736 0.0000 250.0 250.0
  > COCO 0.000 10.610 0.0000 825.0 825.0
  > DF 3.123 27.847 22.6072 425.0 425.0
  > IC 1.021 6.046 0.8536 150.0 500.0
  > PM 5.205 34.645 16.6250 112.5 112.5
  > PP 10.554 40.103 60.7530 100.0 100.0
  > WF 2.529 5.417 5.2581 150.7 275.7
  3319c3320
  < unable to project, return_code = 1, 6.894156, check conifers.h for list of return codes
  ---
  > unable to project, return_code = 1, 6.895566, check conifers.h for list of return codes
  3329,3330c3330,3331
  < x0 = 6.894
  < max sdi = 398.8
  ---
  > x0 = 6.896
  > max sdi = 398.9
  3332,3338c3333,3339
  < CEIN 0.000 8.749 0.0000 250.0 250.0
  < COCO 0.000 10.611 0.0000 825.0 825.0
  < DF 3.141 27.935 22.8727 425.0 425.0
  < IC 1.024 6.120 0.8577 150.0 500.0
  < PM 5.024 33.935 89.4787 650.0 650.0
  < PP 10.544 40.292 60.6383 100.0 100.0
  < WF 2.532 5.396 5.2711 150.7 275.7
  ---
  > CEIN 0.000 8.766 0.0000 250.0 250.0
  > COCO 0.000 10.605 0.0000 825.0 825.0
  > DF 3.156 28.050 23.0834 425.0 425.0
  > IC 1.050 6.066 0.9017 150.0 500.0
  > PM 5.021 33.929 89.3632 650.0 650.0
  > PP 10.535 40.132 60.5358 100.0 100.0
  > WF 2.531 5.470 5.2668 150.7 275.7
  3351,3352c3352,3353
  < x0 = 6.894
  < max sdi = 392.5
  ---
  > x0 = 6.896
  > max sdi = 392.6
  3354,3360c3355,3361
  < CEIN 0.000 8.749 0.0000 250.00 250.00
  < COCO 0.000 10.611 0.0000 825.00 825.00
  < DF 6.044 42.326 10.1546 50.96 50.96
  < IC 1.024 6.120 0.8577 150.00 500.00
  < PM 5.024 33.935 89.4787 650.00 650.00
  < PP 10.544 40.292 60.6383 100.00 100.00
  < WF 2.532 5.396 5.2711 150.74 275.74
  ---
  > CEIN 0.000 8.766 0.0000 250.00 250.00
  > COCO 0.000 10.605 0.0000 825.00 825.00
  > DF 6.088 42.485 10.3011 50.96 50.96
  > IC 1.050 6.066 0.9017 150.00 500.00
  > PM 5.021 33.929 89.3632 650.00 650.00
  > PP 10.535 40.132 60.5358 100.00 100.00
  > WF 2.531 5.470 5.2668 150.74 275.74
  3372,3373c3373,3374
  < x0 = 6.894
  < max sdi = 389.8
  ---
  > x0 = 6.896
  > max sdi = 390
  3375,3381c3376,3382
  < CEIN 0.000 8.749 0.0000 250.000 250.000
  < COCO 0.000 10.611 0.0000 825.000 825.000
  < DF 6.169 43.609 3.1597 15.223 15.223
  < IC 1.206 11.998 0.0610 7.694 11.764
  < PM 4.869 33.774 2.0764 16.061 16.061
  < PP 11.260 42.987 8.9415 12.931 12.931
  < WF 3.772 6.472 0.3594 4.631 6.085
  ---
  > CEIN 0.000 8.766 0.00000 250.000 250.000
  > COCO 0.000 10.605 0.00000 825.000 825.000
  > DF 6.221 43.902 3.21291 15.223 15.223
  > IC 1.236 11.823 0.06413 7.694 11.764
  > PM 4.848 33.731 2.05880 16.061 16.061
  > PP 11.266 43.046 8.95181 12.931 12.931
  > WF 3.777 6.977 0.36037 4.631 6.085
  3393,3394c3394,3395
  < x0 = 6.894
  < max sdi = 380.5
  ---
  > x0 = 6.896
  > max sdi = 380.4
  3396,3397c3397,3398
  < CEIN 0.00 8.749 0.000 250.00 250.00
  < COCO 0.00 10.611 0.000 825.00 825.00
  ---
  > CEIN 0.000 8.766 0.000 250.00 250.00
  > COCO 0.000 10.605 0.000 825.00 825.00
  3400,3402c3401,3403
  < PM 5.45 35.205 12.150 75.00 75.00
  < PP 11.67 43.903 28.415 38.24 38.24
  < WF 35.20 78.077 5.001 0.74 0.74
  ---
  > PM 5.451 35.205 12.154 75.00 75.00
  > PP 11.687 44.129 28.487 38.24 38.24
  > WF 35.200 78.069 5.001 0.74 0.74
  3413,3414c3414,3415
  < x0 = 6.894
  < max sdi = 392.4
  ---
  > x0 = 6.896
  > max sdi = 392.5
  3416,3422c3417,3423
  < CEIN 0.000 8.749 0.0000 250.0 250.0
  < COCO 0.000 10.611 0.0000 825.0 825.0
  < DF 3.141 27.935 22.8727 425.0 425.0
  < IC 1.024 6.120 0.8577 150.0 500.0
  < PM 5.220 34.681 16.7191 112.5 112.5
  < PP 10.544 40.292 60.6383 100.0 100.0
  < WF 2.532 5.396 5.2711 150.7 275.7
  ---
  > CEIN 0.000 8.766 0.0000 250.0 250.0
  > COCO 0.000 10.605 0.0000 825.0 825.0
  > DF 3.156 28.050 23.0834 425.0 425.0
  > IC 1.050 6.066 0.9017 150.0 500.0
  > PM 5.209 34.655 16.6510 112.5 112.5
  > PP 10.535 40.132 60.5358 100.0 100.0
  > WF 2.531 5.470 5.2668 150.7 275.7
  3427,3433c3428,3434
  < CEIN 0.00000 0.00000 0.00 0.0 0.0
  < COCO 0.00000 0.00000 0.00 0.0 0.0
  < DF 0.00000 0.00000 0.00 0.0 0.0
  < IC 0.00000 0.00000 0.00 0.0 0.0
  < PM 0.19607 0.74526 -72.76 -537.5 -537.5
  < PP 0.00000 0.00000 0.00 0.0 0.0
  < WF 0.00000 0.00000 0.00 0.0 0.0
  ---
  > CEIN 0.00000 0.00000 0.000 0.0 0.0
  > COCO 0.00000 0.00000 0.000 0.0 0.0
  > DF 0.00000 0.00000 0.000 0.0 0.0
  > IC 0.00000 0.00000 0.000 0.0 0.0
  > PM 0.18867 0.72659 -72.712 -537.5 -537.5
  > PP 0.00000 0.00000 0.000 0.0 0.0
  > WF 0.00000 0.00000 0.000 0.0 0.0
  3991c3992
  < unable to project, return_code = 1, 7.066635, check conifers.h for list of return codes
  ---
  > unable to project, return_code = 1, 7.072470, check conifers.h for list of return codes
  4210a4212
  > unable to project, return_code = 1, 8.475283, check conifers.h for list of return codes
  4534c4536
  < max sdi = 399.1
  ---
  > max sdi = 398.4
  4536,4542c4538,4544
  < CEIN 0.000 8.779 0.0000 250.0 250.0
  < COCO 0.000 10.610 0.0000 825.0 825.0
  < DF 3.164 27.698 23.2076 425.0 425.0
  < IC 1.033 6.115 0.8729 150.0 500.0
  < PM 5.021 33.929 89.3760 650.0 650.0
  < PP 10.492 40.038 60.0388 100.0 100.0
  < WF 2.531 5.427 5.2677 150.7 275.7
  ---
  > CEIN 0.000 8.777 0.0000 250.0 250.0
  > COCO 0.000 10.609 0.0000 825.0 825.0
  > DF 3.146 27.708 22.9396 425.0 425.0
  > IC 1.013 6.069 0.8401 150.0 500.0
  > PM 5.018 33.923 89.2786 650.0 650.0
  > PP 10.645 41.045 61.7992 100.0 100.0
  > WF 2.531 5.464 5.2668 150.7 275.7
  4562c4564
  < max sdi = 392.8
  ---
  > max sdi = 392.2
  4564,4570c4566,4572
  < CEIN 0.000 8.779 0.0000 250.00 250.00
  < COCO 0.000 10.610 0.0000 825.00 825.00
  < DF 6.119 42.645 10.4078 50.96 50.96
  < IC 1.033 6.115 0.8729 150.00 500.00
  < PM 5.021 33.929 89.3760 650.00 650.00
  < PP 10.492 40.038 60.0388 100.00 100.00
  < WF 2.531 5.427 5.2677 150.74 275.74
  ---
  > CEIN 0.000 8.777 0.0000 250.00 250.00
  > COCO 0.000 10.609 0.0000 825.00 825.00
  > DF 6.085 42.687 10.2903 50.96 50.96
  > IC 1.013 6.069 0.8401 150.00 500.00
  > PM 5.018 33.923 89.2786 650.00 650.00
  > PP 10.645 41.045 61.7992 100.00 100.00
  > WF 2.531 5.464 5.2668 150.74 275.74
  4582c4584
  < max sdi = 390.6
  ---
  > max sdi = 389.9
  4584,4590c4586,4592
  < CEIN 0.000 8.779 0.00000 250.000 250.000
  < COCO 0.000 10.610 0.00000 825.000 825.000
  < DF 6.273 44.296 3.26682 15.223 15.223
  < IC 1.216 11.992 0.06208 7.694 11.764
  < PM 4.850 33.735 2.06058 16.061 16.061
  < PP 11.158 42.398 8.78039 12.931 12.931
  < WF 3.776 6.818 0.36014 4.631 6.085
  ---
  > CEIN 0.000 8.777 0.00000 250.000 250.000
  > COCO 0.000 10.609 0.00000 825.000 825.000
  > DF 6.243 44.336 3.23607 15.223 15.223
  > IC 1.193 11.848 0.05975 7.694 11.764
  > PM 4.836 33.701 2.04881 16.061 16.061
  > PP 11.336 43.648 9.06281 12.931 12.931
  > WF 3.777 6.995 0.36036 4.631 6.085
  4602c4604
  < max sdi = 380.6
  ---
  > max sdi = 380.2
  4604,4605c4606,4607
  < CEIN 0.000 8.779 0.000 250.00 250.00
  < COCO 0.000 10.610 0.000 825.00 825.00
  ---
  > CEIN 0.000 8.777 0.000 250.00 250.00
  > COCO 0.000 10.609 0.000 825.00 825.00
  4608,4610c4610,4612
  < PM 5.452 35.205 12.157 75.00 75.00
  < PP 11.591 43.384 28.021 38.24 38.24
  < WF 35.200 78.078 5.001 0.74 0.74
  ---
  > PM 5.452 35.205 12.160 75.00 75.00
  > PP 11.794 44.847 29.010 38.24 38.24
  > WF 35.200 78.077 5.001 0.74 0.74
  4622c4624
  < max sdi = 392.7
  ---
  > max sdi = 392
  4624,4630c4626,4632
  < CEIN 0.000 8.779 0.0000 250.0 250.0
  < COCO 0.000 10.610 0.0000 825.0 825.0
  < DF 3.164 27.698 23.2076 425.0 425.0
  < IC 1.033 6.115 0.8729 150.0 500.0
  < PM 5.211 34.657 16.6618 112.5 112.5
  < PP 10.492 40.038 60.0388 100.0 100.0
  < WF 2.531 5.427 5.2677 150.7 275.7
  ---
  > CEIN 0.000 8.777 0.0000 250.0 250.0
  > COCO 0.000 10.609 0.0000 825.0 825.0
  > DF 3.146 27.708 22.9396 425.0 425.0
  > IC 1.013 6.069 0.8401 150.0 500.0
  > PM 5.204 34.638 16.6177 112.5 112.5
  > PP 10.645 41.045 61.7992 100.0 100.0
  > WF 2.531 5.464 5.2668 150.7 275.7
  OK
• checking PDF version of manual ... OK