• using R Under development (unstable) (2012-08-14 r60253)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘qPCR.CT/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘qPCR.CT’ version ‘1.1’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘qPCR.CT’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Calc.Expr: no visible binding for global variable ‘Type’
  Calc.Expr: no visible binding for global variable ‘Identifier’
  Calc.Expr: no visible binding for global variable ‘Fluor’
  GroupPlot: no visible binding for global variable ‘Type’
  plot.CT: no visible binding for global variable ‘tr_gene_name’
• checking Rd files ... NOTE
  prepare_Rd: Calc.Expr.Rd:38-40: Dropping empty section \details
  prepare_Rd: Calc.Expr.Rd:41-47: Dropping empty section \value
  prepare_Rd: Calc.Expr.Rd:54-56: Dropping empty section \note
  prepare_Rd: Calc.Expr.Rd:48-50: Dropping empty section \references
  prepare_Rd: Calc.Expr.Rd:60-62: Dropping empty section \seealso
  prepare_Rd: GroupPlot.Rd:34-36: Dropping empty section \details
  prepare_Rd: GroupPlot.Rd:37-43: Dropping empty section \value
  prepare_Rd: GroupPlot.Rd:50-52: Dropping empty section \note
  prepare_Rd: GroupPlot.Rd:44-46: Dropping empty section \references
  prepare_Rd: GroupPlot.Rd:56-58: Dropping empty section \seealso
  prepare_Rd: cal.CT.Rd:18-20: Dropping empty section \details
  prepare_Rd: cal.CT.Rd:21-23: Dropping empty section \source
  prepare_Rd: cal_ct.Rd:48-50: Dropping empty section \note
  prepare_Rd: cal_ct.Rd:42-44: Dropping empty section \references
  prepare_Rd: cal_ct.Rd:54-56: Dropping empty section \seealso
  prepare_Rd: filename.Rd:16-18: Dropping empty section \references
  prepare_Rd: plot.CT.Rd:25-27: Dropping empty section \details
  prepare_Rd: plot.CT.Rd:28-34: Dropping empty section \value
  prepare_Rd: plot.CT.Rd:41-43: Dropping empty section \note
  prepare_Rd: plot.CT.Rd:35-37: Dropping empty section \references
  prepare_Rd: plot.CT.Rd:47-49: Dropping empty section \seealso
  prepare_Rd: repeatnum.Rd:15-17: Dropping empty section \details
  prepare_Rd: repeatnum.Rd:18-20: Dropping empty section \source
  prepare_Rd: repeatnum.Rd:21-23: Dropping empty section \references
  prepare_Rd: tr_gene_name.Rd:15-17: Dropping empty section \details
  prepare_Rd: tr_gene_name.Rd:18-20: Dropping empty section \source
  prepare_Rd: tr_gene_name.Rd:21-23: Dropping empty section \references
  prepare_Rd: tr_group_name.Rd:15-17: Dropping empty section \details
  prepare_Rd: tr_group_name.Rd:18-20: Dropping empty section \source
  prepare_Rd: tr_group_name.Rd:21-23: Dropping empty section \references
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/qPCR.CT.Rcheck/00check.log’
  for details.