• using R Under development (unstable) (2012-08-14 r60253)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘plgp/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘plgp’ version ‘1.1-5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘plgp’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  PL: no visible binding for '<<-' assignment to ‘peach’
  PL: no visible binding for global variable ‘peach’
  PL.clear: no visible binding for '<<-' assignment to ‘pall’
  PL.clear: no visible binding for '<<-' assignment to ‘peach’
  PL.clear: no visible binding for '<<-' assignment to ‘psave’
  addpall.CGP: no visible binding for '<<-' assignment to ‘pall’
  addpall.CGP: no visible binding for global variable ‘pall’
  addpall.ConstGP: no visible binding for '<<-' assignment to ‘pall’
  addpall.ConstGP: no visible binding for global variable ‘pall’
  addpall.GP: no visible binding for '<<-' assignment to ‘pall’
  addpall.GP: no visible binding for global variable ‘pall’
  alc.ConstGP: no visible binding for global variable ‘pall’
  alc.GP: no visible binding for global variable ‘pall’
  alc.adapt: no visible binding for global variable ‘pall’
  alc.const.adapt: no visible binding for global variable ‘pall’
  data.CGP.adapt: no visible binding for global variable ‘Xcand’
  data.CGP.adapt: no visible binding for '<<-' assignment to ‘Xcand’
  data.CGP.adapt: no visible binding for global variable ‘pall’
  data.ConstGP.improv: no visible binding for global variable ‘pall’
  data.ConstGP.improv: no visible binding for '<<-' assignment to ‘psave’
  data.ConstGP.improv: no visible binding for global variable ‘psave’
  data.GP.improv: no visible binding for global variable ‘Xcand’
  data.GP.improv: no visible binding for global variable ‘pall’
  data.GP.improv: no visible binding for '<<-' assignment to ‘Xcand’
  data.GP.improv: no visible binding for '<<-' assignment to ‘psave’
  data.GP.improv: no visible binding for global variable ‘psave’
  draw.CGP: no visible binding for global variable ‘pall’
  draw.GP: no visible binding for global variable ‘pall’
  ei.adapt: no visible binding for global variable ‘pall’
  entropy.adapt: no visible binding for global variable ‘pall’
  findmin.ConstGP: no visible binding for global variable ‘pall’
  findmin.ConstGP: no visible binding for global variable ‘peach’
  findmin.GP: no visible binding for global variable ‘pall’
  getmap.CGP: no visible binding for global variable ‘peach’
  getmap.GP: no visible binding for global variable ‘peach’
  ieci.ConstGP: no visible binding for global variable ‘pall’
  ieci.GP: no visible binding for global variable ‘pall’
  ieci.adapt: no visible binding for global variable ‘pall’
  ieci.const.adapt: no visible binding for global variable ‘pall’
  init.CGP: no visible binding for global variable ‘pall’
  init.GP: no visible binding for global variable ‘pall’
  latents.CGP: no visible binding for global variable ‘peach’
  latents.CGP: no visible binding for global variable ‘pall’
  lpredprob.GP: no visible binding for global variable ‘pall’
  mindist.adapt: no visible binding for global variable ‘pall’
  papply: no visible binding for global variable ‘peach’
  params.CGP: no visible binding for global variable ‘peach’
  params.ConstGP: no visible binding for global variable ‘peach’
  params.GP: no visible binding for global variable ‘peach’
  pred.CGP: no visible binding for global variable ‘pall’
  pred.ConstGP: no visible binding for global variable ‘pall’
  pred.GP: no visible binding for global variable ‘pall’
  pred.mean.GP: no visible binding for global variable ‘pall’
  propagate.GP: no visible binding for global variable ‘pall’
  resample: no visible binding for global variable ‘peach’
  resample: no visible binding for '<<-' assignment to ‘peach’
  updat.GP: no visible binding for global variable ‘pall’
  util.GP: no visible binding for global variable ‘pall’
  util.GP: no visible binding for '<<-' assignment to ‘pall’
  var.adapt: no visible binding for global variable ‘pall’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/plgp.Rcheck/00check.log’
  for details.