• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘pgfSweave/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘pgfSweave’ version ‘1.3.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘pgfSweave’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... WARNING
  Loading required package: stashR
  Loading required package: filehash
  filehash: Simple key-value database (2.2-1 2012-03-12)
  A Set of Tools for Administering SHared Repositories (0.3-5 2012-03-21)
  Loading required package: highlight
  Loading required package: tools
  Loading required package: codetools
  Loading required package: parser
  Loading required package: Rcpp
  Loading required package: formatR
  Loading required package: cacheSweave
  tikzDevice: A Device for R Graphics Output in PGF/TikZ Format (v0.6.2)
  Checking for a LaTeX compiler...
  
  
  A working LaTeX compiler was found by checking:
  The PATH using the command pdflatex
  
  Global option tikzLatex set to:
  /usr/local/texlive/2012/bin/x86_64-linux/pdflatex
  
  pdfTeX 3.1415926-2.4-1.40.13 (TeX Live 2012)
  kpathsea version 6.1.0
  
  
  
  A working XeLaTeX compiler was found by checking:
  The PATH using the command xelatex
  
  Global option tikzXelatex set to:
  /usr/local/texlive/2012/bin/x86_64-linux/xelatex
  
  XeTeX 3.1415926-2.4-0.9998 (TeX Live 2012)
  kpathsea version 6.1.0
  
  
  Error : .onLoad failed in loadNamespace() for ‘pgfSweave’, details:
  call: file(con, "r")
  error: cannot open the connection
  In addition: Warning messages:
  1: running command ‘/usr/local/texlive/2012/bin/x86_64-linux/pdflatex -interaction=batchmode -output-directory /tmp/RtmpCIVnuf test-for-pgf.tex 2>/dev/null’ had status 1
  2: In file(con, "r") :
  cannot open file ‘test-for-pgf.log’: No such file or directory
  Error: package/namespace load failed for ‘pgfSweave’
  Execution halted
  
  It looks like this package has a loading problem when not on .libPaths:
  see the messages for details.
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/pgfSweave.Rcheck/00check.log’
  for details.