• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘pendensity/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘pendensity’ version ‘0.2.3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘pendensity’ can be installed ... [10s/13s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  cal.int: warning in get(paste("coef", i, ".", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  cal.int: warning in assign(paste("INT", i, ".", j, sep = ""), INT, env
  = help.env): partial argument match of 'env' to 'envir'
  distr.func: warning in assign("allx", len.x.fac, env = func.env):
  partial argument match of 'env' to 'envir'
  distr.func: warning in assign("weight1", weight, env = func.env):
  partial argument match of 'env' to 'envir'
  distr.func: warning in assign(name, weight[i, ], env = func.env):
  partial argument match of 'env' to 'envir'
  distr.func: warning in assign("combi", obj$combi, env = func.env):
  partial argument match of 'env' to 'envir'
  distr.func: warning in get(paste("weight", k, sep = ""), env =
  func.env): partial argument match of 'env' to 'envir'
  distr.func: warning in get(paste("weight", i, sep = ""), env =
  func.env): partial argument match of 'env' to 'envir'
  distr.func: warning in assign(paste("distr.func", i, ".", j, sep = ""),
  paste("obj <-function(x){", term, "}"), env = func.env): partial
  argument match of 'env' to 'envir'
  distr.func.help: warning in assign(paste("y.help", i, sep = ""),
  help.seq, env = help.env): partial argument match of 'env' to 'envir'
  distr.func.help: warning in get(paste("y.help", (i + j - 1), sep = ""),
  env = help.env): partial argument match of 'env' to 'envir'
  distr.func.help: warning in assign(paste("y.base.help", i, ".", j, sep
  = ""), base.val, env = help.env): partial argument match of 'env' to
  'envir'
  distr.func.help: warning in assign(paste("y.list.help", i, ".", j, sep
  = ""), list, env = help.env): partial argument match of 'env' to
  'envir'
  distr.func.help: warning in assign(paste("y.vec", i, ".", j, sep = ""),
  y.vec, env = help.env): partial argument match of 'env' to 'envir'
  distr.func.help: warning in assign(paste("coef", i, ".", j, sep = ""),
  (solve(outer(y.vec, 0:q, "^")) %*% (get(paste("y.base.help", i, ".",
  j, sep = ""), env = help.env))), env = help.env): partial argument
  match of 'env' to 'envir'
  distr.func.help: warning in get(paste("y.base.help", i, ".", j, sep =
  ""), env = help.env): partial argument match of 'env' to 'envir'
  pendenForm: warning in eval(parse(text = term), env = penden.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("base1"), help.base.den, env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign("y.help1", y.help, env = help.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("y.help1", sep = ""), y.help,
  env = help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign("weight1", weight, env = help.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign("y.later1", y, env = help.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign("len.x.fac1", 1, env = help.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get("weight1", env = help.env): partial
  argument match of 'env' to 'envir'
  plot.pendensity: warning in get("base1", env = help.env): partial
  argument match of 'env' to 'envir'
  plot.pendensity: warning in get("base1.y.val", env = help.env): partial
  argument match of 'env' to 'envir'
  plot.pendensity: warning in assign("b.w1", bw[-ind], env = help.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign("kern.den1", density(get("y.later1",
  env = help.env), kernel = "gaussian", bw = "ucv"), env = help.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get("y.later1", env = help.env): partial
  argument match of 'env' to 'envir'
  plot.pendensity: warning in get("kern.den1", env = help.env): partial
  argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(name, obj2, env = help.env): partial
  argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("y.later", j, sep = ""), y,
  env = help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("y.help", j, sep = ""),
  y.help, env = help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("base", j, sep = ""),
  help.base.den, env = help.env): partial argument match of 'env' to
  'envir'
  plot.pendensity: warning in assign(paste("base.y.val", j, sep = ""),
  help.base.y.val, env = help.env): partial argument match of 'env' to
  'envir'
  plot.pendensity: warning in get(paste("weight", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("base", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("base.y.val", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("b.w.y.val", j, sep = ""),
  den.val[[j]], env = help.env): partial argument match of 'env' to
  'envir'
  plot.pendensity: warning in assign(paste("b.w", j, sep = ""), bw, env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("b.w", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("kern.den", j, sep = ""),
  density(get(paste("y.later", j, sep = ""), env = help.env), kernel =
  "epanechnikov"), env = help.env): partial argument match of 'env' to
  'envir'
  plot.pendensity: warning in get(paste("y.later", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("kern.den", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("y.help1", sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("b.w1", sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("kern.den1", sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("base", i, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("weight", i, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("y.help", i, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("kern.den", i, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("b.w", i, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(name, weight[i, ], env = help.env):
  partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("y.list", j, sep = ""), set,
  env = help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("y.list", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("distr", j, sep = ""), sum,
  env = help.env): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in get("x.factor", env = func): partial
  argument match of 'env' to 'envir'
  plot.pendensity: warning in get("allx", env = func): partial argument
  match of 'env' to 'envir'
  plot.pendensity: warning in get(paste("distr.func", i, ".", j, sep =
  ""), env = func): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("x", i, sep = ""), w, env =
  func): partial argument match of 'env' to 'envir'
  plot.pendensity: warning in assign(paste("F(x)", i, sep = ""), tt, env
  = func): partial argument match of 'env' to 'envir'
  poly.part: warning in get(paste("INT", i, ".", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  poly.part: warning in get(paste("coef", i, ".", j, sep = ""), env =
  help.env): partial argument match of 'env' to 'envir'
  variance.val: warning in get(name3, env = base.den): partial argument
  match of 'env' to 'envir'
  variance.val: warning in get(name2, env = base.den): partial argument
  match of 'env' to 'envir'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [46s/61s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [115s/162s] OK
• checking re-building of vignette PDFs ... [116s/169s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/pendensity.Rcheck/00check.log’
  for details.