- using R Under development (unstable) (2012-05-22 r59405)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘pencopula/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘pencopula’ version ‘0.3.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘pencopula’ can be installed ... [12s/15s] OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
cal.int: warning in get(paste("coef", i, ".", j, sep = ""), env =
help.env): partial argument match of 'env' to 'envir'
cal.int: warning in assign(paste("INT", i, ".", j, sep = ""), INT[j, i
+ count], env = help.env): partial argument match of 'env' to 'envir'
distr.func.help: warning in assign(paste("y.help", i, sep = ""),
help.seq, env = help.env): partial argument match of 'env' to 'envir'
distr.func.help: warning in get(paste("y.help", i, sep = ""), env =
help.env): partial argument match of 'env' to 'envir'
distr.func.help: warning in assign(paste("y.base.help", i, ".", j, sep
= ""), base.help[list, j], env = help.env): partial argument match of
'env' to 'envir'
distr.func.help: warning in assign(paste("y.list.help", i, ".", j, sep
= ""), list, env = help.env): partial argument match of 'env' to
'envir'
distr.func.help: warning in assign(paste("y.vec", i, ".", j, sep = ""),
y.vec, env = help.env): partial argument match of 'env' to 'envir'
distr.func.help: warning in assign(paste("coef", i, ".", j, sep = ""),
(solve(outer(y.vec, 0:q, "^")) %*% (get(paste("y.base.help", i, ".",
j, sep = ""), env = help.env))), env = help.env): partial argument
match of 'env' to 'envir'
distr.func.help: warning in get(paste("y.base.help", i, ".", j, sep =
""), env = help.env): partial argument match of 'env' to 'envir'
distr.func.help: warning in assign(paste("distr.func", i, ".", j, sep =
""), paste("obj <-function(x){", term, "}"), env = func.env): partial
argument match of 'env' to 'envir'
distr.func.help: warning in get(paste("distr.func", i, ".", j, sep =
""), env = func.env): partial argument match of 'env' to 'envir'
int.my.bspline: warning in assign(paste("y.help", j, sep = ""),
help.seq, env = help.env): partial argument match of 'env' to 'envir'
int.my.bspline: warning in assign(paste("y.list", j, sep = ""), list,
env = help.env): partial argument match of 'env' to 'envir'
int.my.bspline: warning in assign(paste("y.part", j, sep = ""),
get("y", help.env)[list], env = help.env): partial argument match of
'env' to 'envir'
int.my.bspline: warning in assign(paste("base.part", j, i, sep = ""),
get("base.den", help.env)[list, i], env = help.env): partial argument
match of 'env' to 'envir'
int.my.bspline: warning in get(paste("y.help", i, sep = ""), env =
help.env): partial argument match of 'env' to 'envir'
int.my.bspline: warning in assign(paste("y.base.help", i, j, sep = ""),
base.help[list, j], env = help.env): partial argument match of 'env'
to 'envir'
int.my.bspline: warning in assign(paste("y.list.help", i, j, sep = ""),
list, env = help.env): partial argument match of 'env' to 'envir'
int.my.bspline: warning in assign(paste("y.vec", i, sep = ""), y.vec,
env = help.env): partial argument match of 'env' to 'envir'
int.my.bspline: warning in assign(paste("coef", i, ".", j, sep = ""),
(solve(outer(y.vec, 0:q, "^")) %*% (get(paste("y.base.help", i, j,
sep = ""), env = help.env))), env = help.env): partial argument match
of 'env' to 'envir'
int.my.bspline: warning in get(paste("y.base.help", i, j, sep = ""),
env = help.env): partial argument match of 'env' to 'envir'
int.my.bspline: warning in get(paste("coef", i, ".", j, sep = ""), env
= help.env): partial argument match of 'env' to 'envir'
poly.part: warning in get(paste("INT", i, ".", j, sep = ""), env =
help.env): partial argument match of 'env' to 'envir'
poly.part: warning in get(paste("coef", i, ".", j, sep = ""), env =
help.env): partial argument match of 'env' to 'envir'
distr.func.help: no visible global function definition for ‘obj’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.pencopula':
‘plot.pencopula’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [11s/14s] OK
- checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/data/gannet/tmp/ripley/R/packages/tests-devel/pencopula.Rcheck/00check.log’
for details.