• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘multcomp/DESCRIPTION’ ... OK
• this is package ‘multcomp’ version ‘1.2-12’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘multcomp’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [23s/29s] OK
• checking differences from ‘multcomp-Ex.Rout’ to ‘multcomp-Ex.Rout.save’ ...
  280a281,288
  >
  > Attaching package: 'Matrix'
  >
  > The following object(s) are masked from 'package:base':
  >
  > det
  >
  > Warning: replacing previous import 'diag' when loading 'Matrix'
  505c513
  < D - B == 0 4.3333 0.8679 4.993 0.000531 ***
  ---
  > D - B == 0 4.3333 0.8679 4.993 0.000398 ***
  938,939c946,947
  < otrend >= 0 -3.4821 2.0867 -1.669 0.2185
  < atrend >= 0 -314.7324 408.9901 -0.770 0.6625
  ---
  > otrend >= 0 -3.4821 2.0867 -1.669 0.2182
  > atrend >= 0 -314.7324 408.9901 -0.770 0.6621
  1237a1246,1252
  >
  > Attaching package: 'Matrix'
  >
  > The following object(s) are masked from 'package:base':
  >
  > det
  >
  OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [10s/15s] OK
  Running ‘bugfix.R’
  Comparing ‘bugfix.Rout’ to ‘bugfix.Rout.save’ ...124,125c124,125
  < [1] 1.380883e-01 3.524764e-04 3.563710e-07 2.897682e-14 2.050268e-01
  < [6] 9.917862e-04 6.540452e-10 2.512705e-01 3.447725e-06 3.042641e-03
  ---
  > [1] 1.380883e-01 3.524764e-04 9.394029e-07 2.897682e-14 2.050268e-01
  > [6] 9.917862e-04 6.540450e-10 2.512705e-01 3.447725e-06 3.042641e-03
  163c163
  < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
  ---
  > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
  181c181
  < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
  ---
  > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
  202c202
  < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
  ---
  > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
  Running ‘regtest-Tukey.R’
  Comparing ‘regtest-Tukey.Rout’ to ‘regtest-Tukey.Rout.save’ ... OK
  Running ‘regtest-anova.R’
  Comparing ‘regtest-anova.Rout’ to ‘regtest-anova.Rout.save’ ... OK
  Running ‘regtest-interface.R’
  Comparing ‘regtest-interface.Rout’ to ‘regtest-interface.Rout.save’ ... OK
  Running ‘regtest-lme.R’
  Comparing ‘regtest-lme.Rout’ to ‘regtest-lme.Rout.save’ ...11a12,18
  > Attaching package: 'Matrix'
  >
  > The following object(s) are masked from 'package:base':
  >
  > det
  >
  >
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [43s/106s] OK
• checking re-building of vignette PDFs ... [49s/108s] OK
• checking PDF version of manual ... OK