- using R Under development (unstable) (2012-05-22 r59405)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘mboost/DESCRIPTION’ ... OK
- this is package ‘mboost’ version ‘2.1-2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘mboost’ can be installed ... [12s/16s] OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [94s/126s] OK
- checking differences from ‘mboost-Ex.Rout’ to ‘mboost-Ex.Rout.save’ ...
1195a1196,1202
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [283s/402s] OK
Running ‘birds_Biometrics.R’ [22s/33s]
Comparing ‘birds_Biometrics.Rout’ to ‘birds_Biometrics.Rout.save’ ... OK
Running ‘bugfixes.R’ [66s/90s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ...5a6,12
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
599,602c606,609
< Spam version 0.29-1 (2012-05-05) is loaded.
< Type 'help( Spam)' or 'demo( spam)' for a short introduction
< and overview of this package.
< Help for individual functions is also obtained by adding the
---
> Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17).
> Type demo( spam) for some demos, help( Spam) for an overview
> of this package.
> Help for individual functions is optained by adding the
614a622,625
> The following object(s) are masked from 'package:Matrix':
>
> norm
>
617c628
< backsolve, forwardsolve
---
> backsolve, forwardsolve, norm
Running ‘regtest-baselearner.R’ [75s/103s]
Comparing ‘regtest-baselearner.Rout’ to ‘regtest-baselearner.Rout.save’ ...16a17,23
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
Running ‘regtest-blackboost.R’ [26s/37s]
Comparing ‘regtest-blackboost.Rout’ to ‘regtest-blackboost.Rout.save’ ...52,53d51
< Loaded gbm 1.6.3.2
<
Running ‘regtest-family.R’ [18s/25s]
Comparing ‘regtest-family.Rout’ to ‘regtest-family.Rout.save’ ... OK
Running ‘regtest-gamboost.R’ [26s/40s]
Comparing ‘regtest-gamboost.Rout’ to ‘regtest-gamboost.Rout.save’ ... OK
Running ‘regtest-glmboost.R’ [45s/66s]
Comparing ‘regtest-glmboost.Rout’ to ‘regtest-glmboost.Rout.save’ ... OK
Running ‘regtest-hatmatrix.R’
Comparing ‘regtest-hatmatrix.Rout’ to ‘regtest-hatmatrix.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [230s/223s] OK
- checking re-building of vignette PDFs ... [226s/204s] OK
- checking PDF version of manual ... OK