• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘iteRates/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘iteRates’ version ‘1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘iteRates’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: FP.comp.subs.Rd:54-56: Dropping empty section \references
  prepare_Rd: comp.fit.subs.Rd:50-52: Dropping empty section \references
  prepare_Rd: comp.subs.Rd:67-69: Dropping empty section \note
  prepare_Rd: comp.subs.Rd:73-75: Dropping empty section \seealso
  prepare_Rd: id.subtrees.Rd:32-34: Dropping empty section \references
  prepare_Rd: tab.summary.Rd:49-51: Dropping empty section \note
  prepare_Rd: tab.summary.Rd:43-45: Dropping empty section \references
  prepare_Rd: tree.na.Count.Rd:48-50: Dropping empty section \note
  prepare_Rd: tree.na.Count.Rd:42-44: Dropping empty section \references
  prepare_Rd: trimTree.Rd:43-45: Dropping empty section \note
  prepare_Rd: trimTree.Rd:37-39: Dropping empty section \references
  prepare_Rd: trimTree.Rd:49-51: Dropping empty section \seealso
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [48s/62s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/iteRates.Rcheck/00check.log’
  for details.