- using R Under development (unstable) (2012-05-22 r59405)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘igraph/DESCRIPTION’ ... OK
- this is package ‘igraph’ version ‘0.5.5-4’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘igraph’ can be installed ... [89s/152s] OK
- checking installed package size ... NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
libs 7.9Mb
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
.tkigraph.load: warning in ls(all = TRUE): partial argument match of
'all' to 'all.names'
.tkigraph.motifs.draw: warning in matrix(c(1, 1, 0, 0, 2, 0), nc = 2,
byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.draw: warning in matrix(c(0, 1, 1, 1, 0, 0, 1, 0), nc
= 2, byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.draw: warning in matrix(1:(rows * cols), nr = rows,
byrow = TRUE): partial argument match of 'nr' to 'nrow'
.tkigraph.motifs.draw: warning in graph.isocreate(read$size, i, dir =
read$dir): partial argument match of 'dir' to 'directed'
.tkigraph.motifs.find: warning in matrix(c(1, 1, 0, 0, 2, 0), nc = 2,
byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.find: warning in matrix(c(0, 1, 1, 1, 0, 0, 1, 0), nc
= 2, byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.find: warning in matrix(1:(rows * cols), nr = rows,
byrow = TRUE): partial argument match of 'nr' to 'nrow'
.tkigraph.motifs.find: warning in graph.isocreate(read$size, i, dir =
is.directed(graphs[[gnos]])): partial argument match of 'dir' to
'directed'
.tkplot.update.edge: warning in matrix(c(xx, yy, xx + 20, yy - 10, xx +
30, yy, xx + 20, yy + 10, xx, yy), nc = 2, byrow = TRUE): partial
argument match of 'nc' to 'ncol'
alpha.centrality: warning in matrix(exo, nc = 1): partial argument
match of 'nc' to 'ncol'
get.adjacency.dense: warning in matrix(0, nr = vcount(graph), nc =
vcount(graph)): partial argument match of 'nr' to 'nrow'
get.adjacency.dense: warning in matrix(0, nr = vcount(graph), nc =
vcount(graph)): partial argument match of 'nc' to 'ncol'
get.edgelist: warning in matrix(.Call("R_igraph_get_edgelist", graph,
TRUE, PACKAGE = "igraph"), nc = 2): partial argument match of 'nc' to
'ncol'
get.edgelist: warning in matrix(V(graph)$name[res + 1], nc = 2):
partial argument match of 'nc' to 'ncol'
get.edges: warning in matrix(res, nc = 2, byrow = TRUE): partial
argument match of 'nc' to 'ncol'
graph.data.frame: warning in matrix(c(ids[from], ids[to]), nc = 2):
partial argument match of 'nc' to 'ncol'
i.get.layout: warning in matrix(unlist(get.vertex.attribute(graph,
substring(layout, 3))), nr = vcount(graph), byrow = TRUE): partial
argument match of 'nr' to 'nrow'
layout.drl: warning in matrix(runif(vcount(graph) * 2), nc = 2):
partial argument match of 'nc' to 'ncol'
plot.igraph : loop: warning in matrix(c(x0, y0, x0 + 0.4, y0 + 0.2, x0
+ 0.4, y0 - 0.2, x0, y0), nc = 2, byrow = TRUE): partial argument
match of 'nc' to 'ncol'
print.igraph.es: warning in matrix(V(graph)$name[el + 1], nc = 2):
partial argument match of 'nc' to 'ncol'
tkplot : <anonymous> : <anonymous>: warning in tkplot.rotate(tkp.id,
deg = deg): partial argument match of 'deg' to 'degree'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... WARNING
File ‘/data/gannet/tmp/ripley/R/packages/tests-devel/igraph.Rcheck/igraph/libs/igraph.so’:
Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
Objects: ‘DensityGrid.o’, ‘DensityGrid_3d.o’, ‘drl_graph.o’,
‘drl_parse.o’
Found ‘abort’, possibly from ‘abort’ (C)
Object: ‘error.o’
Found ‘exit’, possibly from ‘exit’ (C)
Objects: ‘DensityGrid.o’, ‘DensityGrid_3d.o’, ‘drl_graph.o’,
‘drl_parse.o’, ‘foreign-gml-lexer.o’, ‘foreign-lgl-lexer.o’,
‘foreign-ncol-lexer.o’, ‘foreign-pajek-lexer.o’,
‘gengraph_degree_sequence.o’, ‘gengraph_graph_molloy_optimized.o’
Found ‘printf’, possibly from ‘printf’ (C)
Objects: ‘bfgs.o’, ‘dlamch.o’, ‘gengraph_degree_sequence.o’,
‘pottsmodel_2.o’, ‘revolver_ml_cit.o’, ‘xerbla.o’
Found ‘putchar’, possibly from ‘putchar’ (C)
Object: ‘revolver_ml_cit.o’
Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
Objects: ‘bfgs.o’, ‘dlamch.o’
Found ‘stderr’, possibly from ‘stderr’ (C)
Objects: ‘bliss_graph.o’, ‘error.o’, ‘foreign-gml-lexer.o’,
‘foreign-lgl-lexer.o’, ‘foreign-ncol-lexer.o’,
‘foreign-pajek-lexer.o’, ‘gengraph_degree_sequence.o’,
‘gengraph_graph_molloy_hash.o’,
‘gengraph_graph_molloy_optimized.o’, ‘gengraph_mr-connected.o’,
‘gengraph_powerlaw.o’, ‘progress.o’, ‘rinterface.o’
Found ‘stdout’, possibly from ‘stdout’ (C)
Objects: ‘bliss.o’, ‘bliss_graph.o’, ‘foreign-gml-lexer.o’,
‘foreign-lgl-lexer.o’, ‘foreign-ncol-lexer.o’,
‘foreign-pajek-lexer.o’
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking examples ... [9s/12s] OK
- checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
‘/data/gannet/tmp/ripley/R/packages/tests-devel/igraph.Rcheck/00check.log’
for details.