• using R Under development (unstable) (2012-08-14 r60253)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘hglm/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘hglm’ version ‘1.2-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘hglm’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘hglm/R/hglm.R’:
  .onAttach calls:
  cat("hglm: Hierarchical Generalized Linear Models\n")
  cat("Version 1.2-2 installed\n")
  cat("\n")
  cat("Authors: Moudud Alam - maa@du.se\n")
  cat(" Xia Shen - xia.shen@icm.uu.se\n")
  cat(" Lars Ronnegard - lrn@du.se\n")
  cat("\n")
  cat("Maintainer: Lars Ronnegard - lrn@du.se\n")
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  print.summary.hglm: warning in printCoefmat(x$FixCoefMat, digits =
  digits, P.value = TRUE, has.Pvalue = TRUE): partial argument match of
  'P.value' to 'P.values'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files are already in R: ‘Sweave.sty’
  Please remove them from your package.
  The following files look like leftovers/mistakes:
  ‘pdfpages.ins’
  Please remove them from your package.
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/hglm.Rcheck/00check.log’
  for details.