• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘geneListPie/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘geneListPie’ version ‘1.0’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... WARNING
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking whether package ‘geneListPie’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
  by using R CMD build --resave-data
  old_size new_size compress
  goslim.human.BP.RData 26Kb 23Kb xz
  goslim.human.CC.RData 77Kb 66Kb bzip2
  goslim.human.MF.RData 58Kb 36Kb xz
  goslim.human.all.RData 163Kb 131Kb bzip2
  goslim.mouse.BP.RData 31Kb 21Kb xz
  goslim.mouse.CC.RData 51Kb 36Kb xz
  goslim.mouse.MF.RData 58Kb 36Kb xz
  goslim.mouse.all.RData 142Kb 78Kb xz
  goslim.rat.BP.RData 22Kb 19Kb xz
  goslim.rat.CC.RData 72Kb 59Kb bzip2
  goslim.rat.MF.RData 71Kb 60Kb bzip2
  goslim.rat.all.RData 163Kb 123Kb bzip2
  goslim.yeast.BP.RData 13Kb 9Kb xz
  goslim.yeast.CC.RData 25Kb 17Kb xz
  goslim.yeast.MF.RData 20Kb 14Kb xz
  goslim.yeast.all.RData 57Kb 35Kb xz
  kegg2.5.generic.RData 25Kb 21Kb xz
• checking examples ... OK
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/geneListPie.Rcheck/00check.log’
  for details.