• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘gdata/DESCRIPTION’ ... OK
• this is package ‘gdata’ version ‘2.8.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘gdata’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... WARNING
  env : get.environment.size: warning in ls(pos, all = TRUE): partial
  argument match of 'all' to 'all.names'
  env : get.environment.nobjects: warning in ls(pos, all = TRUE): partial
  argument match of 'all' to 'all.names'
  ConvertMedUnits: no visible binding for global variable ‘MedUnits’
  Found .Internal call in the following function:
  ‘object.size’
  with calls to .Internal functions
  ‘object.size’
  
  Packages should not call .Internal(): it is not part of the API, for
  use only by R itself and subject to change without notice.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'aggregate.table':
  ‘aggregate.table’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files should probably not be installed:
  ‘Rnews.sty’, ‘gregmisc.tex’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [6s/12s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘test.read.xls.R’
  Comparing ‘test.read.xls.Rout’ to ‘test.read.xls.Rout.save’ ...10,13d9
  < The following object(s) are masked from 'package:stats':
  <
  < nobs
  <
  528c524
  < X D E. F G Factor
  ---
  > X D E F G Factor
  538,542c534,538
  < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
  < 3 4 2004-04-04 4:04 0.4116363 0.70807342
  < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
  < 5 6 2006-06-06 6:06 NA 0.25136984 B
  < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
  ---
  > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
  > 3 4 2004-04-04 4:04 0.4116363 0.7080734
  > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
  > 5 6 2006-06-06 6:06 NA 0.2513698 B
  > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
  544,545c540,541
  < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
  < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
  ---
  > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
  > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
  551,555c547,551
  < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
  < 3 4 2004-04-04 4:04 0.4116363 0.70807342
  < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
  < 5 6 2006-06-06 6:06 NA 0.25136984 B
  < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
  ---
  > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
  > 3 4 2004-04-04 4:04 0.4116363 0.7080734
  > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
  > 5 6 2006-06-06 6:06 NA 0.2513698 B
  > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
  557,558c553,554
  < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
  < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
  ---
  > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
  > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
  589c585
  < X D E. F G Factor
  ---
  > X D E F G Factor
  596,600c592,596
  < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
  < 3 4 2004-04-04 4:04 0.4116363 0.70807342
  < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
  < 5 6 2006-06-06 6:06 NA 0.25136984 B
  < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
  ---
  > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
  > 3 4 2004-04-04 4:04 0.4116363 0.7080734
  > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
  > 5 6 2006-06-06 6:06 NA 0.2513698 B
  > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
  602,603c598,599
  < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
  < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
  ---
  > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
  > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
  606,610c602,606
  < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
  < 3 4 2004-04-04 4:04 0.4116363 0.70807342
  < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
  < 5 6 2006-06-06 6:06 NA 0.25136984 B
  < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
  ---
  > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
  > 3 4 2004-04-04 4:04 0.4116363 0.7080734
  > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
  > 5 6 2006-06-06 6:06 NA 0.2513698 B
  > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
  612,614c608,610
  < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
  < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
  < X D E. F G Factor
  ---
  > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
  > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
  > X D E F G Factor
  619c615
  < X X.1 D E. F G Factor
  ---
  > X X.1 D E F G Factor
  Running ‘test.write.fwf.eol.R’
  Running ‘tests.write.fwf.R’
  Comparing ‘tests.write.fwf.Rout’ to ‘tests.write.fwf.Rout.save’ ...17,20d16
  < The following object(s) are masked from 'package:stats':
  <
  < nobs
  <
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... [3s/10s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 2 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/gdata.Rcheck/00check.log’
  for details.