Check results for 'drfit'

using R Under development (unstable) (2012-08-14 r60253)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘drfit/DESCRIPTION’ ... OK
this is package ‘drfit’ version ‘0.05-95’
package encoding: latin1
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
checking for executable files ... OK
checking for hidden files and directories ... OK
checking whether package ‘drfit’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
checkexperiment: no visible binding for global variable ‘type’
checkexperiment: no visible binding for global variable ‘conc’
drfit: no visible binding for global variable ‘ok’
drfit: no visible binding for global variable ‘dose’
drplot: no visible binding for global variable ‘dose’
drplot: no visible binding for global variable ‘Substance’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking examples ... OK
checking for unstated dependencies in tests ... OK
checking tests ... OK
Running ‘IM1xIPC81.R’
Comparing ‘IM1xIPC81.Rout’ to ‘IM1xIPC81.Rout.save’ ...17c17
< In pnorm(-log10(dose), -logED50, scale) : NaNs produced
---
> In pnorm(q, mean, sd, lower.tail, log.p) : NaNs produced
31c31
< In pnorm(-log10(dose), -logED50, scale) : NaNs produced
---
> In pnorm(q, mean, sd, lower.tail, log.p) : NaNs produced
39c39
< In pnorm(-log10(dose), -logED50, scale) : NaNs produced
---
> In pnorm(q, mean, sd, lower.tail, log.p) : NaNs produced
47c47
< In pnorm(-log10(dose), -logED50, scale) : NaNs produced
---
> In pnorm(q, mean, sd, lower.tail, log.p) : NaNs produced
54,61c54,61
< 1 IM13 BF4 9 81 0.59176 3.0000 inactive NA NA NA microM
< 2 IM14 BF4 20 216 -0.01030 3.1761 no fit NA NA NA microM
< 3 IM15 BF4 9 135 0.59176 3.0000 inactive NA NA NA microM
< 4 IM16 BF4 9 108 0.59176 3.0000 inactive NA NA NA microM
< 5 IM17 BF4 9 81 0.59176 3.0000 linlogit 2.5786 2.50572 2.66174 microM
< 6 IM18 BF4 9 135 0.59176 3.0000 linlogit 1.6806 1.62297 1.74189 microM
< 7 IM19 BF4 9 81 0.59176 3.0000 linlogit 1.6496 1.59848 1.70315 microM
< 8 IM1-10 BF4 11 162 -0.01030 3.0000 linlogit 0.7697 0.68701 0.85442 microM
---
> 1 IM13 BF4 9 81 0.591760 3.0000 inactive NA NA NA microM
> 2 IM14 BF4 20 216 -0.010300 3.1761 no fit NA NA NA microM
> 3 IM15 BF4 9 135 0.591760 3.0000 inactive NA NA NA microM
> 4 IM16 BF4 9 108 0.591760 3.0000 inactive NA NA NA microM
> 5 IM17 BF4 9 81 0.591760 3.0000 linlogit 2.5786 2.50572 2.66174 microM
> 6 IM18 BF4 9 135 0.591760 3.0000 linlogit 1.6806 1.62297 1.74189 microM
> 7 IM19 BF4 9 81 0.591760 3.0000 linlogit 1.6496 1.59848 1.70315 microM
> 8 IM1-10 BF4 11 162 -0.010300 3.0000 linlogit 0.7697 0.68701 0.85442 microM
Running ‘IM1xVibrio.R’
Comparing ‘IM1xVibrio.Rout’ to ‘IM1xVibrio.Rout.save’ ...40,47c40,47
< 1 IM13 BF4 13 22 -5.30103 4.699 probit 3.93991 3.86362 4.01601 microM
< 2 IM14 BF4 12 57 -4.30103 4.699 probit 3.54421 3.50302 3.58555 microM
< 3 IM15 BF4 7 20 -0.30103 4.699 probit 3.13985 3.11359 3.16624 microM
< 4 IM16 BF4 13 30 -4.30103 4.699 probit 3.18042 3.14358 3.21762 microM
< 5 IM17 BF4 10 20 -1.30103 4.699 probit 2.43173 2.36807 2.49512 microM
< 6 IM18 BF4 10 17 -2.30103 2.699 probit 1.40152 1.31467 1.48806 microM
< 7 IM19 BF4 13 22 -5.30103 2.699 probit 0.71579 0.67038 0.75925 microM
< 8 IM1-10 BF4 11 20 -6.30103 2.699 probit -0.17903 -0.25694 -0.10372 microM
---
> 1 IM13 BF4 13 22 -5.30103 4.6990 probit 3.93991 3.86362 4.01601 microM
> 2 IM14 BF4 12 57 -4.30103 4.6990 probit 3.54421 3.50302 3.58555 microM
> 3 IM15 BF4 7 20 -0.30103 4.6990 probit 3.13985 3.11359 3.16624 microM
> 4 IM16 BF4 13 30 -4.30103 4.6990 probit 3.18042 3.14358 3.21762 microM
> 5 IM17 BF4 10 20 -1.30103 4.6990 probit 2.43173 2.36807 2.49512 microM
> 6 IM18 BF4 10 17 -2.30103 2.6990 probit 1.40152 1.31467 1.48806 microM
> 7 IM19 BF4 13 22 -5.30103 2.6990 probit 0.71579 0.67038 0.75925 microM
> 8 IM1-10 BF4 11 20 -6.30103 2.6990 probit -0.17903 -0.25694 -0.10372 microM
Running ‘XY.R’
Comparing ‘XY.Rout’ to ‘XY.Rout.save’ ... OK
Running ‘antifoul.R’
Comparing ‘antifoul.Rout’ to ‘antifoul.Rout.save’ ... OK
Running ‘pyrithione.R’
Comparing ‘pyrithione.Rout’ to ‘pyrithione.Rout.save’ ... OK
checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/data/blackswan/ripley/R/packages/tests-devel/drfit.Rcheck/00check.log’
for details.