• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘distory/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘distory’ version ‘1.4’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘distory’ can be installed ... [12s/17s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘distory/R/zzz.R’:
  .First.lib calls:
  require(ape)
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in ?.onAttach.
  
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘distory-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: bin.multiPhylo
  > ### Title: Bin Trees
  > ### Aliases: bin.multiPhylo
  >
  > ### ** Examples
  >
  >
  > data(woodmouse)
  > otree <- root(fastme.ols(dist.dna(woodmouse)), "No305", resolve.root=TRUE)
  Error in fastme.ols(dist.dna(woodmouse)) :
  array over-run in .C("me_o") in character argument 8, element 1
  ''->' 1'
  Calls: root -> inherits -> fastme.ols -> .C
  Execution halted