• using R Under development (unstable) (2012-05-22 r59404)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘cthresh/DESCRIPTION’ ... OK
• this is package ‘cthresh’ version ‘4.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘cthresh’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  cthresh: warning in complex(mod = sqrt(bhatsq * (k^2 + 1)), arg =
  Arg(coefs)): partial argument match of 'mod' to 'modulus'
  cthresh: warning in complex(mod = sqrt(bhatsq * (k^2 + 1)), arg =
  Arg(coefs)): partial argument match of 'arg' to 'argument'
  cthresh: warning in complex(real = coefs.thr[, 1], imag = coefs.thr[,
  2]): partial argument match of 'imag' to 'imaginary'
  wd: warning in complex(real = wavelet.decomposition$CR, im =
  wavelet.decomposition$CI): partial argument match of 'im' to
  'imaginary'
  wd: warning in complex(real = wavelet.decomposition$DR, im =
  wavelet.decomposition$DI): partial argument match of 'im' to
  'imaginary'
  wr.wd: warning in complex(real = wavelet.reconstruction$CR, im =
  wavelet.reconstruction$CI): partial argument match of 'im' to
  'imaginary'
  wr.wd: warning in complex(real = wavelet.reconstruction$DR, im =
  wavelet.reconstruction$DI): partial argument match of 'im' to
  'imaginary'
  wst: warning in complex(real = wavelet.station$newdataR, im =
  wavelet.station$newdataI): partial argument match of 'im' to
  'imaginary'
  wst: warning in complex(real = wavelet.station$CaR, im =
  wavelet.station$CaI): partial argument match of 'im' to 'imaginary'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/cthresh.Rcheck/00check.log’
  for details.