Check results for 'coin'

using R Under development (unstable) (2012-05-22 r59404)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘coin/DESCRIPTION’ ... OK
this is package ‘coin’ version ‘1.0-21’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package ‘coin’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable compilation flags in Makevars ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking examples ... [32s/42s] OK
checking differences from ‘coin-Ex.Rout’ to ‘coin-Ex.Rout.save’ ...
512c512
< maxT = 4.3139, p-value = 0.0001796
---
> maxT = 4.3139, p-value = 0.0001256
553c553
< maxT = 3.5691, p-value = 0.004179
---
> maxT = 3.5691, p-value = 0.004194
567c567
< maxT = 2.4033, p-value = 0.1565
---
> maxT = 2.4033, p-value = 0.1554
1624c1624
< [1] 0.007140628
---
> [1] 0.007050271
1626c1626
< 0.006371664 0.007909593
---
> 0.006381220 0.007719323
1632c1632
< control 0.007991569 0.01726738 0.03830126
---
> control 0.00719172 0.01726738 0.03836982
1886c1886
< maxT = 2.3966, p-value = 0.1588
---
> maxT = 2.3966, p-value = 0.1591
1901c1901
< maxT = 2.4033, p-value = 0.1562
---
> maxT = 2.4033, p-value = 0.1567
1991c1991
< maxT = 4.3139, p-value = 0.0006596
---
> maxT = 4.3139, p-value = 0.0006695
OK
checking for unstated dependencies in tests ... OK
checking tests ... [25s/33s] OK
Running ‘bugfixes.R’
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ... OK
Running ‘comparisons.R’
Comparing ‘comparisons.Rout’ to ‘comparisons.Rout.save’ ... OK
Running ‘regtest_2sample.R’
Comparing ‘regtest_2sample.Rout’ to ‘regtest_2sample.Rout.save’ ... OK
Running ‘regtest_Ksample.R’
Comparing ‘regtest_Ksample.Rout’ to ‘regtest_Ksample.Rout.save’ ... OK
Running ‘regtest_MTP.R’
Comparing ‘regtest_MTP.Rout’ to ‘regtest_MTP.Rout.save’ ...122c122
< 0.002
---
> 0.003
124,136c124,136
< [1] 0.6481706 0.6830317 0.7417413 0.7429394 0.7471368 0.7471368 0.7492471
< [8] 0.7589106 0.7676483 0.7816434 0.7942386 0.8116505 0.8226725 0.8245171
< [15] 0.8253003 0.8324195 0.8337632 0.8373320 0.8525585 0.8855569 0.9025458
< [22] 0.9070381 0.9163612 0.9179829 0.9191600 0.9307632 0.9330064 0.9392341
< [29] 0.9409298 0.9468305 0.9485837 0.9515145 0.9548228 0.9562792 0.9630122
< [36] 0.9635222 0.9721147 0.9812231 0.9917027 0.9940881 1.0029342 1.0029889
< [43] 1.0095933 1.0145457 1.0182565 1.0186660 1.0212751 1.0235436 1.0237810
< [50] 1.0262165 1.0297242 1.0340606 1.0340606 1.0430732 1.0458874 1.0498878
< [57] 1.0506798 1.0555919 1.0566997 1.0615403 1.0639924 1.0645473 1.0686089
< [64] 1.0735716 1.0802040 1.0875173 1.0881194 1.0917778 1.0939841 1.0945296
< [71] 1.0952418 1.0955066 1.0970107 1.1017785 1.1021256 1.1057524 1.1091774
< [78] 1.1105977 1.1147163 1.1179901 1.1201253 1.1207179 1.1238677 1.1239792
< [85] 1.1310841 1.1321419 1.1343007 1.1469572 1.1558663 1.1558663 1.1587371
---
> [1] 0.6481706 0.6830317 0.7417413 0.7429394 0.7471368 0.7492471 0.7589106
> [8] 0.7676483 0.7816434 0.7942386 0.8116505 0.8226725 0.8245171 0.8253003
> [15] 0.8324195 0.8337632 0.8373320 0.8525585 0.8855569 0.9025458 0.9070381
> [22] 0.9163612 0.9179829 0.9191600 0.9307632 0.9330064 0.9392341 0.9409298
> [29] 0.9468305 0.9485837 0.9515145 0.9548228 0.9562792 0.9630122 0.9635222
> [36] 0.9721147 0.9812231 0.9917027 0.9940881 1.0029342 1.0029889 1.0095933
> [43] 1.0145457 1.0182565 1.0186660 1.0212751 1.0235436 1.0237810 1.0262165
> [50] 1.0297242 1.0340606 1.0340606 1.0430732 1.0458874 1.0498878 1.0506798
> [57] 1.0555919 1.0566997 1.0615403 1.0639924 1.0645473 1.0686089 1.0735716
> [64] 1.0802040 1.0875173 1.0881194 1.0917778 1.0939841 1.0945296 1.0952418
> [71] 1.0955066 1.0970107 1.1017785 1.1021256 1.1057524 1.1091774 1.1105977
> [78] 1.1147163 1.1179901 1.1201253 1.1207179 1.1238677 1.1239792 1.1310841
> [85] 1.1321419 1.1343007 1.1469572 1.1469572 1.1558663 1.1558663 1.1587371
145,237c145,237
< [148] 1.2440044 1.2463837 1.2489507 1.2494981 1.2539827 1.2539827 1.2587335
< [155] 1.2596364 1.2600212 1.2641731 1.2647412 1.2692492 1.2723953 1.2728114
< [162] 1.2747162 1.2778729 1.2783455 1.2803926 1.2816317 1.2830912 1.2832457
< [169] 1.2850212 1.2876139 1.2930449 1.2932804 1.2951529 1.2992603 1.3012717
< [176] 1.3019755 1.3019828 1.3040599 1.3049915 1.3058555 1.3096196 1.3103688
< [183] 1.3159767 1.3160285 1.3162388 1.3162388 1.3166835 1.3167631 1.3167679
< [190] 1.3173369 1.3196203 1.3205828 1.3208831 1.3225957 1.3238053 1.3316761
< [197] 1.3325497 1.3361634 1.3366143 1.3409871 1.3410782 1.3420475 1.3434721
< [204] 1.3483024 1.3484421 1.3485241 1.3499980 1.3520332 1.3540969 1.3547956
< [211] 1.3558382 1.3592237 1.3627448 1.3633943 1.3633943 1.3639534 1.3643080
< [218] 1.3682867 1.3692462 1.3692462 1.3708955 1.3708955 1.3708955 1.3724934
< [225] 1.3740301 1.3740301 1.3774621 1.3775386 1.3792152 1.3793846 1.3799077
< [232] 1.3801428 1.3810727 1.3825300 1.3906406 1.3912557 1.3940623 1.3985446
< [239] 1.3985446 1.3985446 1.4025464 1.4032534 1.4041451 1.4064314 1.4078959
< [246] 1.4086695 1.4089102 1.4093542 1.4114480 1.4123646 1.4146143 1.4162180
< [253] 1.4165415 1.4173974 1.4173974 1.4180695 1.4180928 1.4220235 1.4242267
< [260] 1.4251524 1.4272404 1.4308835 1.4331429 1.4340890 1.4348457 1.4355944
< [267] 1.4357805 1.4446309 1.4448241 1.4452041 1.4452636 1.4487485 1.4507083
< [274] 1.4535878 1.4550642 1.4566659 1.4578447 1.4608900 1.4621685 1.4650437
< [281] 1.4673083 1.4679024 1.4683155 1.4689667 1.4704969 1.4704969 1.4710581
< [288] 1.4714749 1.4732658 1.4787015 1.4841698 1.4944549 1.4944549 1.4955514
< [295] 1.4955514 1.4955514 1.4981299 1.5027100 1.5051638 1.5053891 1.5069784
< [302] 1.5076078 1.5082578 1.5086347 1.5114499 1.5121267 1.5124597 1.5124999
< [309] 1.5126128 1.5139258 1.5149704 1.5155712 1.5167216 1.5168624 1.5174951
< [316] 1.5214452 1.5229935 1.5236808 1.5246757 1.5268864 1.5286190 1.5318845
< [323] 1.5336636 1.5337974 1.5342035 1.5355667 1.5368348 1.5374949 1.5374949
< [330] 1.5374949 1.5383403 1.5396895 1.5421143 1.5432784 1.5433725 1.5454085
< [337] 1.5462087 1.5465440 1.5465972 1.5475016 1.5497560 1.5497577 1.5507847
< [344] 1.5512456 1.5512456 1.5518041 1.5521341 1.5529497 1.5541843 1.5545986
< [351] 1.5546780 1.5572005 1.5572013 1.5577554 1.5577554 1.5581419 1.5589209
< [358] 1.5593435 1.5659512 1.5660967 1.5672798 1.5675958 1.5708063 1.5719291
< [365] 1.5746076 1.5747925 1.5752037 1.5752037 1.5752037 1.5752715 1.5757444
< [372] 1.5763699 1.5792554 1.5792554 1.5797873 1.5798495 1.5804026 1.5849396
< [379] 1.5881532 1.5890125 1.5894520 1.5908172 1.5908172 1.5908172 1.5911901
< [386] 1.5945764 1.5963458 1.5964615 1.5984861 1.6005319 1.6008282 1.6105197
< [393] 1.6106970 1.6109238 1.6146631 1.6151017 1.6156059 1.6198320 1.6215140
< [400] 1.6219958 1.6274584 1.6274883 1.6275403 1.6280386 1.6365680 1.6392492
< [407] 1.6392713 1.6396608 1.6415343 1.6423477 1.6426350 1.6435074 1.6452769
< [414] 1.6479923 1.6491283 1.6503198 1.6528347 1.6534940 1.6538369 1.6555278
< [421] 1.6560894 1.6560894 1.6608978 1.6628221 1.6639955 1.6646018 1.6657499
< [428] 1.6690859 1.6691580 1.6698226 1.6793760 1.6799487 1.6800475 1.6800475
< [435] 1.6800475 1.6843367 1.6861827 1.6887761 1.6909092 1.6922613 1.6942988
< [442] 1.6942988 1.6958107 1.6965507 1.6988668 1.7003240 1.7018524 1.7018524
< [449] 1.7018524 1.7018524 1.7019272 1.7020937 1.7037720 1.7064735 1.7077300
< [456] 1.7077300 1.7130551 1.7165136 1.7176019 1.7181732 1.7232931 1.7270163
< [463] 1.7273409 1.7273871 1.7291303 1.7318070 1.7324034 1.7347711 1.7364031
< [470] 1.7403456 1.7405825 1.7409372 1.7409372 1.7409372 1.7432345 1.7438744
< [477] 1.7438744 1.7481597 1.7488248 1.7508115 1.7513056 1.7516879 1.7519351
< [484] 1.7534655 1.7585339 1.7603891 1.7610477 1.7648952 1.7648952 1.7648952
< [491] 1.7653094 1.7655036 1.7666495 1.7671012 1.7689994 1.7694840 1.7704082
< [498] 1.7723171 1.7724424 1.7736183 1.7772564 1.7789796 1.7822772 1.7828210
< [505] 1.7833516 1.7834485 1.7852216 1.7869379 1.7873105 1.7884895 1.7903962
< [512] 1.7910873 1.7919685 1.7925400 1.7944960 1.7953344 1.7958006 1.7981080
< [519] 1.7988593 1.7988593 1.7993667 1.8005946 1.8020078 1.8020078 1.8020078
< [526] 1.8024277 1.8047369 1.8047369 1.8047369 1.8075165 1.8110635 1.8117169
< [533] 1.8120300 1.8169682 1.8169682 1.8177772 1.8231808 1.8243463 1.8254983
< [540] 1.8291283 1.8318457 1.8338363 1.8352599 1.8366330 1.8401981 1.8450337
< [547] 1.8466203 1.8471748 1.8472843 1.8486521 1.8487906 1.8487906 1.8512910
< [554] 1.8515315 1.8519694 1.8548042 1.8562994 1.8568376 1.8569900 1.8579313
< [561] 1.8583408 1.8591662 1.8604018 1.8614020 1.8617485 1.8627776 1.8644441
< [568] 1.8659481 1.8659948 1.8667491 1.8667491 1.8677380 1.8681634 1.8689240
< [575] 1.8710724 1.8720204 1.8742679 1.8753398 1.8773064 1.8773108 1.8773130
< [582] 1.8812952 1.8812952 1.8838474 1.8847065 1.8865638 1.8870475 1.8879885
< [589] 1.8895496 1.8944800 1.8949009 1.8977414 1.8994796 1.8996174 1.8997047
< [596] 1.8998033 1.8998033 1.8998033 1.9029214 1.9055921 1.9106601 1.9119338
< [603] 1.9179066 1.9199402 1.9223795 1.9262669 1.9271783 1.9292065 1.9294200
< [610] 1.9309424 1.9341724 1.9345916 1.9380354 1.9380354 1.9409216 1.9413849
< [617] 1.9415956 1.9423561 1.9484029 1.9489598 1.9506080 1.9509899 1.9529229
< [624] 1.9532999 1.9550248 1.9553315 1.9559842 1.9572732 1.9611722 1.9628536
< [631] 1.9641887 1.9646608 1.9710897 1.9710897 1.9721952 1.9725703 1.9754178
< [638] 1.9785923 1.9847065 1.9857492 1.9857492 1.9878935 1.9911448 1.9912185
< [645] 1.9956549 1.9963727 1.9974267 2.0032657 2.0058779 2.0064238 2.0067603
< [652] 2.0090542 2.0101908 2.0116542 2.0118436 2.0124684 2.0146480 2.0158151
< [659] 2.0169357 2.0169785 2.0175277 2.0197590 2.0238077 2.0248344 2.0262629
< [666] 2.0271467 2.0271467 2.0320848 2.0330519 2.0340419 2.0348243 2.0350978
< [673] 2.0424087 2.0449339 2.0500564 2.0534828 2.0536108 2.0537459 2.0553147
< [680] 2.0586942 2.0602242 2.0628012 2.0631024 2.0632810 2.0649243 2.0695605
< [687] 2.0713814 2.0738355 2.0753112 2.0757144 2.0758724 2.0770841 2.0819504
< [694] 2.0840754 2.0883479 2.0887705 2.0890140 2.0893772 2.0939643 2.0939643
< [701] 2.0956216 2.0972239 2.1036735 2.1036735 2.1051631 2.1051631 2.1053006
< [708] 2.1054678 2.1174920 2.1208879 2.1224612 2.1248329 2.1253033 2.1255576
< [715] 2.1273876 2.1299288 2.1351551 2.1372171 2.1447085 2.1448222 2.1461100
< [722] 2.1468986 2.1543845 2.1577613 2.1593361 2.1628465 2.1698384 2.1710739
< [729] 2.1724795 2.1738672 2.1762369 2.1765795 2.1817019 2.1842489 2.1917599
< [736] 2.1926526 2.1978361 2.1984958 2.2023641 2.2058592 2.2092370 2.2092842
< [743] 2.2135559 2.2204171 2.2224043 2.2266602 2.2273826 2.2310090 2.2311722
< [750] 2.2311815 2.2325141 2.2375192 2.2444508 2.2493929 2.2495822 2.2509095
< [757] 2.2513481 2.2545307 2.2600741 2.2621880 2.2630462 2.2648422 2.2834450
< [764] 2.2890315 2.2893155 2.2933210 2.2978150 2.3005983 2.3081873 2.3094342
< [771] 2.3101442 2.3103682 2.3121288 2.3185740 2.3258023 2.3281143 2.3303104
< [778] 2.3307405 2.3307405 2.3324606 2.3350062 2.3361699 2.3384529 2.3412961
< [785] 2.3466940 2.3485152 2.3556362 2.3643391 2.3682073 2.3693351 2.3953984
< [792] 2.4015264 2.4049370 2.4061487 2.4084709 2.4084709 2.4084709 2.4122425
---
> [148] 1.2440044 1.2463837 1.2489507 1.2494981 1.2494981 1.2539827 1.2539827
> [155] 1.2587335 1.2596364 1.2600212 1.2641731 1.2647412 1.2692492 1.2723953
> [162] 1.2728114 1.2747162 1.2778729 1.2783455 1.2803926 1.2816317 1.2830912
> [169] 1.2832457 1.2850212 1.2876139 1.2930449 1.2932804 1.2951529 1.2992603
> [176] 1.3012717 1.3019755 1.3019828 1.3040599 1.3049915 1.3058555 1.3096196
> [183] 1.3103688 1.3159767 1.3160285 1.3162388 1.3162388 1.3166835 1.3167631
> [190] 1.3167679 1.3173369 1.3196203 1.3205828 1.3208831 1.3225957 1.3238053
> [197] 1.3316761 1.3325497 1.3325497 1.3361634 1.3366143 1.3409871 1.3410782
> [204] 1.3420475 1.3434721 1.3483024 1.3484421 1.3485241 1.3499980 1.3520332
> [211] 1.3540969 1.3540969 1.3547956 1.3558382 1.3592237 1.3627448 1.3633943
> [218] 1.3633943 1.3639534 1.3643080 1.3682867 1.3692462 1.3692462 1.3708955
> [225] 1.3708955 1.3724934 1.3740301 1.3740301 1.3774621 1.3775386 1.3792152
> [232] 1.3793846 1.3799077 1.3799077 1.3801428 1.3810727 1.3825300 1.3906406
> [239] 1.3912557 1.3940623 1.3985446 1.3985446 1.3985446 1.4025464 1.4032534
> [246] 1.4041451 1.4064314 1.4078959 1.4086695 1.4089102 1.4093542 1.4114480
> [253] 1.4123646 1.4146143 1.4162180 1.4165415 1.4173974 1.4173974 1.4180695
> [260] 1.4180928 1.4220235 1.4242267 1.4251524 1.4272404 1.4308835 1.4331429
> [267] 1.4340890 1.4348457 1.4355944 1.4357805 1.4446309 1.4448241 1.4452041
> [274] 1.4452636 1.4487485 1.4507083 1.4535878 1.4550642 1.4566659 1.4578447
> [281] 1.4608900 1.4621685 1.4650437 1.4673083 1.4679024 1.4679024 1.4683155
> [288] 1.4689667 1.4704969 1.4710581 1.4714749 1.4732658 1.4787015 1.4841698
> [295] 1.4944549 1.4944549 1.4955514 1.4955514 1.4955514 1.4981299 1.5027100
> [302] 1.5051638 1.5053891 1.5069784 1.5076078 1.5082578 1.5086347 1.5114499
> [309] 1.5121267 1.5124597 1.5124999 1.5126128 1.5139258 1.5149704 1.5155712
> [316] 1.5167216 1.5168624 1.5174951 1.5214452 1.5229935 1.5236808 1.5246757
> [323] 1.5268864 1.5286190 1.5318845 1.5336636 1.5337974 1.5342035 1.5355667
> [330] 1.5368348 1.5374949 1.5374949 1.5374949 1.5383403 1.5396895 1.5421143
> [337] 1.5432784 1.5433725 1.5433725 1.5433725 1.5454085 1.5462087 1.5465440
> [344] 1.5465972 1.5475016 1.5497560 1.5497577 1.5507847 1.5512456 1.5512456
> [351] 1.5518041 1.5521341 1.5529497 1.5541843 1.5545986 1.5546780 1.5572005
> [358] 1.5572013 1.5577554 1.5581419 1.5589209 1.5593435 1.5659512 1.5660967
> [365] 1.5672798 1.5675958 1.5708063 1.5708063 1.5719291 1.5746076 1.5747925
> [372] 1.5752037 1.5752037 1.5752715 1.5757444 1.5763699 1.5792554 1.5797873
> [379] 1.5798495 1.5804026 1.5849396 1.5849396 1.5849396 1.5881532 1.5890125
> [386] 1.5894520 1.5908172 1.5908172 1.5911901 1.5945764 1.5963458 1.5964615
> [393] 1.5984861 1.6005319 1.6008282 1.6105197 1.6106970 1.6109238 1.6146631
> [400] 1.6151017 1.6156059 1.6198320 1.6215140 1.6219958 1.6274584 1.6274883
> [407] 1.6275403 1.6280386 1.6365680 1.6392492 1.6392713 1.6396608 1.6415343
> [414] 1.6423477 1.6426350 1.6435074 1.6452769 1.6479923 1.6491283 1.6503198
> [421] 1.6528347 1.6534940 1.6538369 1.6555278 1.6560894 1.6608978 1.6628221
> [428] 1.6639955 1.6646018 1.6657499 1.6690859 1.6691580 1.6698226 1.6793760
> [435] 1.6799487 1.6800475 1.6800475 1.6800475 1.6843367 1.6861827 1.6887761
> [442] 1.6909092 1.6922613 1.6942988 1.6942988 1.6958107 1.6965507 1.6988668
> [449] 1.7003240 1.7018524 1.7018524 1.7019272 1.7020937 1.7037720 1.7064735
> [456] 1.7077300 1.7077300 1.7077300 1.7130551 1.7165136 1.7176019 1.7181732
> [463] 1.7232931 1.7270163 1.7273409 1.7273871 1.7291303 1.7318070 1.7324034
> [470] 1.7347711 1.7364031 1.7403456 1.7405825 1.7409372 1.7409372 1.7409372
> [477] 1.7432345 1.7438744 1.7438744 1.7438744 1.7481597 1.7488248 1.7508115
> [484] 1.7513056 1.7516879 1.7519351 1.7534655 1.7585339 1.7603891 1.7610477
> [491] 1.7648952 1.7648952 1.7653094 1.7655036 1.7666495 1.7671012 1.7689994
> [498] 1.7694840 1.7704082 1.7723171 1.7724424 1.7736183 1.7772564 1.7789796
> [505] 1.7822772 1.7828210 1.7833516 1.7834485 1.7852216 1.7869379 1.7873105
> [512] 1.7884895 1.7903962 1.7910873 1.7919685 1.7925400 1.7944960 1.7953344
> [519] 1.7958006 1.7981080 1.7988593 1.7988593 1.7993667 1.8005946 1.8020078
> [526] 1.8020078 1.8020078 1.8024277 1.8047369 1.8047369 1.8047369 1.8075165
> [533] 1.8110635 1.8117169 1.8120300 1.8169682 1.8177772 1.8231808 1.8243463
> [540] 1.8254983 1.8291283 1.8318457 1.8318457 1.8338363 1.8352599 1.8366330
> [547] 1.8401981 1.8450337 1.8466203 1.8471748 1.8472843 1.8486521 1.8487906
> [554] 1.8487906 1.8512910 1.8515315 1.8519694 1.8548042 1.8562994 1.8568376
> [561] 1.8569900 1.8579313 1.8583408 1.8591662 1.8604018 1.8614020 1.8617485
> [568] 1.8627776 1.8644441 1.8659481 1.8659948 1.8667491 1.8667491 1.8677380
> [575] 1.8681634 1.8689240 1.8710724 1.8720204 1.8742679 1.8753398 1.8773064
> [582] 1.8773108 1.8773130 1.8812952 1.8812952 1.8838474 1.8847065 1.8865638
> [589] 1.8870475 1.8879885 1.8895496 1.8944800 1.8949009 1.8977414 1.8994796
> [596] 1.8996174 1.8997047 1.8998033 1.8998033 1.8998033 1.9029214 1.9055921
> [603] 1.9106601 1.9119338 1.9179066 1.9199402 1.9223795 1.9262669 1.9271783
> [610] 1.9292065 1.9294200 1.9309424 1.9341724 1.9345916 1.9345916 1.9380354
> [617] 1.9409216 1.9413849 1.9415956 1.9423561 1.9484029 1.9489598 1.9506080
> [624] 1.9509899 1.9529229 1.9532999 1.9550248 1.9553315 1.9559842 1.9572732
> [631] 1.9611722 1.9628536 1.9641887 1.9646608 1.9710897 1.9721952 1.9725703
> [638] 1.9754178 1.9785923 1.9847065 1.9857492 1.9857492 1.9878935 1.9911448
> [645] 1.9912185 1.9956549 1.9963727 1.9974267 2.0032657 2.0058779 2.0064238
> [652] 2.0067603 2.0090542 2.0101908 2.0116542 2.0118436 2.0124684 2.0146480
> [659] 2.0158151 2.0169357 2.0169785 2.0175277 2.0197590 2.0238077 2.0248344
> [666] 2.0262629 2.0271467 2.0271467 2.0320848 2.0330519 2.0340419 2.0348243
> [673] 2.0350978 2.0424087 2.0449339 2.0500564 2.0534828 2.0536108 2.0537459
> [680] 2.0553147 2.0586942 2.0602242 2.0628012 2.0631024 2.0632810 2.0649243
> [687] 2.0695605 2.0713814 2.0738355 2.0753112 2.0757144 2.0758724 2.0770841
> [694] 2.0819504 2.0840754 2.0883479 2.0887705 2.0890140 2.0893772 2.0939643
> [701] 2.0939643 2.0956216 2.0972239 2.1036735 2.1036735 2.1051631 2.1051631
> [708] 2.1053006 2.1054678 2.1174920 2.1208879 2.1224612 2.1248329 2.1253033
> [715] 2.1255576 2.1273876 2.1299288 2.1351551 2.1372171 2.1447085 2.1448222
> [722] 2.1461100 2.1468986 2.1543845 2.1577613 2.1593361 2.1628465 2.1698384
> [729] 2.1710739 2.1724795 2.1738672 2.1762369 2.1765795 2.1817019 2.1842489
> [736] 2.1917599 2.1926526 2.1978361 2.1984958 2.2023641 2.2058592 2.2092370
> [743] 2.2092842 2.2092842 2.2135559 2.2204171 2.2224043 2.2266602 2.2273826
> [750] 2.2310090 2.2311722 2.2311815 2.2325141 2.2375192 2.2444508 2.2493929
> [757] 2.2495822 2.2509095 2.2513481 2.2545307 2.2600741 2.2621880 2.2630462
> [764] 2.2648422 2.2834450 2.2890315 2.2893155 2.2933210 2.2978150 2.3005983
> [771] 2.3081873 2.3094342 2.3101442 2.3103682 2.3121288 2.3185740 2.3258023
> [778] 2.3281143 2.3303104 2.3307405 2.3324606 2.3350062 2.3361699 2.3384529
> [785] 2.3412961 2.3466940 2.3485152 2.3556362 2.3643391 2.3682073 2.3693351
> [792] 2.3953984 2.4015264 2.4049370 2.4061487 2.4084709 2.4084709 2.4122425
239,247c239,248
< [806] 2.4303954 2.4325004 2.4361200 2.4361200 2.4419976 2.4419976 2.4419976
< [813] 2.4642892 2.4643594 2.4657953 2.4672505 2.4756440 2.4786191 2.4873436
< [820] 2.4944178 2.5124715 2.5138218 2.5308869 2.5545247 2.5575156 2.5627621
< [827] 2.5684345 2.5855701 2.5963887 2.5977375 2.6138031 2.6184213 2.6189115
< [834] 2.6241168 2.6256362 2.6275509 2.6416512 2.6419692 2.6481544 2.6492540
< [841] 2.6512093 2.6670721 2.6670721 2.6699908 2.6728795 2.7033542 2.7171027
< [848] 2.7453054 2.7453054 2.7765383 2.7882406 2.8547780 2.8565312 2.8575218
< [855] 2.9194806 2.9244188 2.9268780 2.9280168 2.9406200 2.9406200 3.0775149
< [862] 3.0814132 3.1078875 3.1599248 3.1870317 3.2024782 3.2309405 3.2929856
---
> [806] 2.4303954 2.4325004 2.4361200 2.4361200 2.4419976 2.4419976 2.4642892
> [813] 2.4643594 2.4657953 2.4672505 2.4756440 2.4786191 2.4873436 2.4944178
> [820] 2.5124715 2.5138218 2.5308869 2.5545247 2.5575156 2.5627621 2.5684345
> [827] 2.5855701 2.5963887 2.5977375 2.6138031 2.6184213 2.6189115 2.6241168
> [834] 2.6256362 2.6275509 2.6416512 2.6419692 2.6481544 2.6492540 2.6512093
> [841] 2.6670721 2.6670721 2.6670721 2.6699908 2.6728795 2.7033542 2.7171027
> [848] 2.7453054 2.7453054 2.7453054 2.7765383 2.7882406 2.8547780 2.8565312
> [855] 2.8575218 2.9194806 2.9194806 2.9244188 2.9268780 2.9280168 2.9406200
> [862] 2.9406200 3.0775149 3.0814132 3.1078875 3.1599248 3.1870317 3.2024782
> [869] 3.2309405 3.2929856
298,337c299,338
< [171] 0.4336282053 0.4336282053 0.4410453510 0.4419492542 0.4438289717
< [176] 0.4454743782 0.4458816475 0.4530470219 0.4533480669 0.4547960724
< [181] 0.4612772414 0.4651225600 0.4670380274 0.4785764566 0.4797744276
< [186] 0.4862984195 0.4950226298 0.4963258493 0.4995232096 0.4996442043
< [191] 0.4999195097 0.4999195097 0.5034185734 0.5121951942 0.5151195862
< [196] 0.5176380793 0.5304868183 0.5369964381 0.5432604331 0.5460040595
< [201] 0.5473641664 0.5484956164 0.5501546132 0.5523011501 0.5526505035
< [206] 0.5542188666 0.5567956975 0.5574453110 0.5584678488 0.5610852311
< [211] 0.5633229146 0.5726515059 0.5780416410 0.5827924225 0.5894311109
< [216] 0.5897865064 0.5920057479 0.5969263633 0.6035415668 0.6096609986
< [221] 0.6100780993 0.6182608801 0.6185783225 0.6199926052 0.6204881115
< [226] 0.6215101030 0.6226328170 0.6250082131 0.6297455934 0.6338340111
< [231] 0.6354935193 0.6368330004 0.6421296317 0.6422930425 0.6422930425
< [236] 0.6423198465 0.6443710199 0.6443710199 0.6481706461 0.6506535244
< [241] 0.6513025116 0.6546921080 0.6573949205 0.6586039100 0.6651326598
< [246] 0.6713184196 0.6757548025 0.6760521797 0.6786054493 0.6823441921
< [251] 0.6842872876 0.6855365166 0.6905179283 0.6925932658 0.6963417277
< [256] 0.6997298693 0.7020147183 0.7020185847 0.7041789398 0.7049893407
< [261] 0.7121572477 0.7134428858 0.7148757917 0.7154279396 0.7190419836
< [266] 0.7231046585 0.7268165619 0.7317874831 0.7328045707 0.7448533406
< [271] 0.7473745033 0.7492471454 0.7530169942 0.7537585922 0.7542680028
< [276] 0.7556759506 0.7583715621 0.7608875424 0.7645850907 0.7756327130
< [281] 0.7768961815 0.7771147764 0.7808959581 0.7867402759 0.7882823883
< [286] 0.7913682161 0.8022044279 0.8040244080 0.8079523900 0.8109022021
< [291] 0.8134843942 0.8189413304 0.8189764254 0.8190197149 0.8249094159
< [296] 0.8254342647 0.8278855655 0.8302978129 0.8313382211 0.8326028830
< [301] 0.8356542458 0.8364088265 0.8368883217 0.8476198611 0.8506535441
< [306] 0.8525584520 0.8525584520 0.8576553975 0.8579406119 0.8582178973
< [311] 0.8612641396 0.8626248509 0.8657436896 0.8704908887 0.8706335528
< [316] 0.8712913326 0.8717292666 0.8749103039 0.8780609714 0.8786843908
< [321] 0.8791982615 0.8825103527 0.8850610606 0.8867136117 0.8870315258
< [326] 0.8897903914 0.8946386958 0.8950390906 0.8975521119 0.8993096915
< [331] 0.8993207844 0.8994566421 0.9085456648 0.9120869656 0.9123325222
< [336] 0.9145751451 0.9161557395 0.9233354553 0.9243523501 0.9253477433
< [341] 0.9263702911 0.9275700440 0.9294145544 0.9296877865 0.9316630820
< [346] 0.9381747840 0.9412684735 0.9417957172 0.9430680935 0.9434581205
< [351] 0.9457854912 0.9476273963 0.9483103983 0.9509748926 0.9527866530
< [356] 0.9565427348 0.9567034122 0.9570236642 0.9579316040 0.9628184681
< [361] 0.9658641763 0.9672360840 0.9696497462 0.9696877264 0.9708568766
< [366] 0.9714076614 0.9791446536 0.9821436496 0.9847432780 0.9852819313
---
> [171] 0.4336282053 0.4410453510 0.4419492542 0.4438289717 0.4454743782
> [176] 0.4458816475 0.4530470219 0.4533480669 0.4547960724 0.4612772414
> [181] 0.4651225600 0.4670380274 0.4785764566 0.4797744276 0.4862984195
> [186] 0.4950226298 0.4963258493 0.4995232096 0.4996442043 0.4999195097
> [191] 0.4999195097 0.5034185734 0.5121951942 0.5151195862 0.5176380793
> [196] 0.5304868183 0.5369964381 0.5432604331 0.5460040595 0.5473641664
> [201] 0.5484956164 0.5501546132 0.5523011501 0.5526505035 0.5542188666
> [206] 0.5567956975 0.5574453110 0.5584678488 0.5610852311 0.5633229146
> [211] 0.5726515059 0.5780416410 0.5827924225 0.5894311109 0.5897865064
> [216] 0.5920057479 0.5969263633 0.6035415668 0.6096609986 0.6100780993
> [221] 0.6182608801 0.6185783225 0.6199926052 0.6204881115 0.6215101030
> [226] 0.6226328170 0.6250082131 0.6297455934 0.6338340111 0.6354935193
> [231] 0.6368330004 0.6421296317 0.6422930425 0.6423198465 0.6443710199
> [236] 0.6481706461 0.6481706461 0.6506535244 0.6513025116 0.6546921080
> [241] 0.6573949205 0.6586039100 0.6651326598 0.6713184196 0.6757548025
> [246] 0.6760521797 0.6786054493 0.6823441921 0.6842872876 0.6855365166
> [251] 0.6905179283 0.6925932658 0.6963417277 0.6997298693 0.7020147183
> [256] 0.7020185847 0.7041789398 0.7049893407 0.7121572477 0.7134428858
> [261] 0.7148757917 0.7154279396 0.7190419836 0.7231046585 0.7268165619
> [266] 0.7317874831 0.7328045707 0.7448533406 0.7473745033 0.7492471454
> [271] 0.7530169942 0.7537585922 0.7542680028 0.7556759506 0.7583715621
> [276] 0.7608875424 0.7645850907 0.7645850907 0.7756327130 0.7768961815
> [281] 0.7771147764 0.7808959581 0.7867402759 0.7882823883 0.7913682161
> [286] 0.8022044279 0.8040244080 0.8079523900 0.8109022021 0.8134843942
> [291] 0.8189413304 0.8189764254 0.8190197149 0.8249094159 0.8254342647
> [296] 0.8278855655 0.8302978129 0.8313382211 0.8326028830 0.8356542458
> [301] 0.8364088265 0.8368883217 0.8476198611 0.8506535441 0.8525584520
> [306] 0.8525584520 0.8576553975 0.8579406119 0.8582178973 0.8612641396
> [311] 0.8626248509 0.8657436896 0.8704908887 0.8706335528 0.8712913326
> [316] 0.8717292666 0.8749103039 0.8780609714 0.8786843908 0.8791982615
> [321] 0.8825103527 0.8850610606 0.8867136117 0.8870315258 0.8897903914
> [326] 0.8946386958 0.8950390906 0.8975521119 0.8993096915 0.8993207844
> [331] 0.8994566421 0.9085456648 0.9120869656 0.9123325222 0.9145751451
> [336] 0.9161557395 0.9233354553 0.9243523501 0.9253477433 0.9263702911
> [341] 0.9275700440 0.9294145544 0.9296877865 0.9316630820 0.9381747840
> [346] 0.9412684735 0.9417957172 0.9430680935 0.9434581205 0.9457854912
> [351] 0.9476273963 0.9483103983 0.9509748926 0.9527866530 0.9565427348
> [356] 0.9567034122 0.9570236642 0.9579316040 0.9628184681 0.9658641763
> [361] 0.9672360840 0.9696497462 0.9696877264 0.9708568766 0.9714076614
> [366] 0.9791446536 0.9821436496 0.9847432780 0.9852819313 0.9852819313
345,350c346,351
< [406] 1.0804123728 1.0853789540 1.0860816344 1.0991895115 1.1017784755
< [411] 1.1046868112 1.1048100465 1.1090854568 1.1098687023 1.1103585140
< [416] 1.1106842081 1.1123412712 1.1179901212 1.1209737978 1.1238677248
< [421] 1.1238677248 1.1279506044 1.1297363285 1.1305988092 1.1425161650
< [426] 1.1426100831 1.1431822610 1.1451630943 1.1465041145 1.1469571612
< [431] 1.1476833023 1.1527901280 1.1543447086 1.1558663013 1.1558663013
---
> [406] 1.0804123728 1.0853789540 1.0860816344 1.0860816344 1.0991895115
> [411] 1.1017784755 1.1046868112 1.1048100465 1.1090854568 1.1098687023
> [416] 1.1103585140 1.1106842081 1.1123412712 1.1179901212 1.1209737978
> [421] 1.1238677248 1.1238677248 1.1279506044 1.1297363285 1.1305988092
> [426] 1.1425161650 1.1426100831 1.1431822610 1.1451630943 1.1465041145
> [431] 1.1469571612 1.1476833023 1.1527901280 1.1543447086 1.1558663013
364,442c365,444
< [501] 1.2818615224 1.2846062248 1.2850212111 1.2891696848 1.2908056518
< [506] 1.2951202335 1.3037572639 1.3062447701 1.3078381675 1.3158973968
< [511] 1.3162388167 1.3162388167 1.3173369142 1.3179338371 1.3179451916
< [516] 1.3201653930 1.3221164203 1.3221164203 1.3221809299 1.3275959832
< [521] 1.3313814638 1.3325496841 1.3342832176 1.3365437449 1.3399966629
< [526] 1.3400456057 1.3449265374 1.3476485072 1.3491592706 1.3499979538
< [531] 1.3535425890 1.3538719838 1.3708955177 1.3735542842 1.3740301163
< [536] 1.3740301163 1.3785905235 1.3796924286 1.3799077199 1.3849139519
< [541] 1.3871408726 1.3881817939 1.3910315135 1.3914310591 1.3932218531
< [546] 1.3972157275 1.3985445538 1.3985445538 1.4019976575 1.4043129745
< [551] 1.4060171692 1.4078958695 1.4115734155 1.4129233059 1.4173974156
< [556] 1.4202413075 1.4253128101 1.4275563039 1.4296342940 1.4334683554
< [561] 1.4348456853 1.4422774709 1.4463531538 1.4507766712 1.4616651781
< [566] 1.4679023713 1.4704969009 1.4719030991 1.4738301298 1.4744370255
< [571] 1.4760747589 1.4787014640 1.4819863418 1.4837125965 1.4856128231
< [576] 1.4876072177 1.4909011771 1.4931183487 1.4943600656 1.4955514074
< [581] 1.4955514074 1.4955971878 1.4966031879 1.5025590352 1.5029238065
< [586] 1.5053891241 1.5061514650 1.5119850496 1.5134505325 1.5190107618
< [591] 1.5191557285 1.5215720473 1.5227683546 1.5322348977 1.5324380451
< [596] 1.5337973756 1.5347007751 1.5358939073 1.5372798827 1.5374949240
< [601] 1.5396894638 1.5397581605 1.5423974339 1.5433725275 1.5442830951
< [606] 1.5465544801 1.5473780412 1.5512456454 1.5572004792 1.5577554239
< [611] 1.5580255259 1.5621939232 1.5638538545 1.5657625969 1.5682934646
< [616] 1.5688394093 1.5708062641 1.5752036936 1.5823004887 1.5849395806
< [621] 1.5849395806 1.5894520117 1.5900713373 1.5908171842 1.5908171842
< [626] 1.5911901366 1.5964614761 1.6028837062 1.6082358352 1.6106677488
< [631] 1.6146631354 1.6188289215 1.6251350611 1.6269586497 1.6271783469
< [636] 1.6332530304 1.6346780113 1.6360317020 1.6426350482 1.6523083232
< [641] 1.6546368239 1.6555401152 1.6560894238 1.6581224211 1.6611573396
< [646] 1.6655932055 1.6670975484 1.6691835035 1.6699414262 1.6739166794
< [651] 1.6741700594 1.6800474721 1.6828229015 1.6852234566 1.6853519802
< [656] 1.6915680230 1.6985978629 1.7018524031 1.7018524031 1.7018524031
< [661] 1.7052340605 1.7077300067 1.7077300067 1.7078177983 1.7112543814
< [666] 1.7122506630 1.7139214013 1.7194647547 1.7301911970 1.7396812595
< [671] 1.7403456175 1.7405824801 1.7409371553 1.7415894173 1.7571514548
< [676] 1.7572098012 1.7602720172 1.7639130675 1.7646751636 1.7648952035
< [681] 1.7786626791 1.7808045462 1.7817866094 1.7827680901 1.7828210074
< [686] 1.7852215525 1.7868856889 1.7878280478 1.7918081356 1.7920943736
< [691] 1.7928908405 1.7953344008 1.7983451379 1.7988592567 1.7993667128
< [696] 1.8026566403 1.8037029655 1.8047368603 1.8047368603 1.8048640059
< [701] 1.8049064360 1.8059189254 1.8059930662 1.8082623833 1.8099299510
< [706] 1.8135183237 1.8138017721 1.8168966217 1.8184786258 1.8225034367
< [711] 1.8238410395 1.8294713475 1.8429070803 1.8431419750 1.8442684202
< [716] 1.8453194215 1.8472173082 1.8480313604 1.8488392922 1.8512910405
< [721] 1.8512910405 1.8529336178 1.8667490720 1.8709061601 1.8724598294
< [726] 1.8756603913 1.8812951636 1.8842320454 1.8902371969 1.8907892938
< [731] 1.8909748471 1.8918092090 1.8931899897 1.8959935749 1.8998033218
< [736] 1.9036068613 1.9039339475 1.9074354559 1.9078009692 1.9093078472
< [741] 1.9127317090 1.9168578067 1.9172276212 1.9188355006 1.9199321085
< [746] 1.9207282785 1.9276661339 1.9320648072 1.9345915872 1.9381990332
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> [751] -0.272306326 -0.268890316 -0.266625224 -0.261460502 -0.255777180
> [756] -0.250679970 -0.249533283 -0.246271767 -0.227031407 -0.226875612
> [761] -0.225989034 -0.220459743 -0.219541880 -0.215297741 -0.212673927
> [766] -0.210816317 -0.209531400 -0.205341986 -0.193431740 -0.192169010
> [771] -0.191254175 -0.179546878 -0.177431798 -0.176642058 -0.175983470
> [776] -0.164359293 -0.147866663 -0.143564569 -0.142167687 -0.134371266
> [781] -0.125941103 -0.114305923 -0.113779453 -0.112682995 -0.112106060
> [786] -0.108246728 -0.086130417 -0.083942772 -0.083942772 -0.064242750
> [791] -0.051207120 -0.049158884 -0.046066592 -0.043770258 -0.022000473
> [796] -0.016309288 -0.011728623 0.001378065 0.001378065 0.002578482
> [801] 0.015407655 0.015882985 0.020779419 0.028232259 0.028281577
> [806] 0.032742114 0.036498116 0.042628617 0.042631870 0.053045461
> [811] 0.055665212 0.067389789 0.071393477 0.080414707 0.093811395
> [816] 0.094060689 0.107267222 0.112182815 0.114305923 0.131196462
> [821] 0.153284397 0.157986473 0.163395608 0.167509231 0.167860278
> [826] 0.172097223 0.172643706 0.173433151 0.176060117 0.177421561
> [831] 0.185188137 0.193431740 0.197663983 0.200452322 0.213501760
> [836] 0.240708908 0.245569490 0.247407580 0.254513107 0.256449270
> [841] 0.261795631 0.266011499 0.285193670 0.290438593 0.299609040
> [846] 0.304733021 0.305198879 0.311336157 0.311368714 0.326602671
> [851] 0.333442763 0.342984970 0.344614075 0.362344318 0.369264771
> [856] 0.373972964 0.389903146 0.411646163 0.415810732 0.417087303
> [861] 0.422964906 0.423642740 0.426703698 0.433628205 0.435560004
> [866] 0.458447670 0.475381810 0.485529915 0.506988104 0.511771547
> [871] 0.511948746 0.516279355 0.521657266 0.532753263 0.537512136
> [876] 0.550808196 0.595303435 0.651943073 0.659573161 0.780895958
> [881] 0.797470508 0.841465425 0.931775502 1.098762794 1.101778475
> [886] 1.283950536
Running ‘regtest_contingency.R’
Comparing ‘regtest_contingency.Rout’ to ‘regtest_contingency.Rout.save’ ...76c76
< maxT = 2.3738, p-value = 0.184
---
> maxT = 2.3738, p-value = 0.1836
Running ‘regtest_correlation.R’
Comparing ‘regtest_correlation.Rout’ to ‘regtest_correlation.Rout.save’ ... OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [33s/44s] OK
checking re-building of vignette PDFs ... [67s/109s] OK
checking PDF version of manual ... OK