Check results for 'clim.pact'

using R Under development (unstable) (2012-05-22 r59404)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘clim.pact/DESCRIPTION’ ... OK
this is package ‘clim.pact’ version ‘2.3-10’
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... WARNING
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
checking for executable files ... OK
checking whether package ‘clim.pact’ can be installed ... [8s/11s] OK
checking installed package size ... NOTE
installed size is 6.8Mb
sub-directories of 1Mb or more:
data 6.3Mb
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
EOF: warning in matrix(c(2, 1), nc = 2): partial argument match of 'nc'
to 'ncol'
MVR: warning in matrix(c(2, 1), nc = 2): partial argument match of 'nc'
to 'ncol'
avail.locs: warning in
read.fwf("data/nordklim_station_catalogue_v1_0.prn", skip = 1, as.is
= TRUE, fill = TRUE, width = c(2, 30, 12, 11, 11, 4, 3, 2, 4, 3, 2,
9, rep(6, 23)), col.names = col.names, fileEncoding = "latin1"):
partial argument match of 'width' to 'widths'
composite.field: warning in matrix(c(2, 1), nc = 2): partial argument
match of 'nc' to 'ncol'
corEOF: warning in matrix(c(2, 1), nc = 2): partial argument match of
'nc' to 'ncol'
corField: warning in matrix(c(2, 1), nc = 2): partial argument match of
'nc' to 'ncol'
getnacd: warning in read.fwf(paste("data/nacd_v1.", ele.c, sep = ""),
width = c(5, 3, 4, rep(5, 12), 3)): partial argument match of 'width'
to 'widths'
getnacd: warning in switch(as.character(meta$quality), ` H` =
"Homogenous, rigorously tested & adjusted", H = "Homogenous,
rigorously tested & adjusted", ` T` = "Tested, maybe adjusted but not
perfectly H.", T = "Tested, maybe adjusted but not perfectly H.", `
N` = "Not tested for inhomogenouity", N = "Not tested for
inhomogenouity", ` E` = "Environm. changes prevents clim.change
studies", E = "Environm. changes prevents clim.change studies", ` I`
= "Inhomogenous series which presently are unadjustable", I =
"Inhomogenous series which presently are unadjustable"): partial
argument match of 'E' to 'EXPR'
map: warning in matrix(c(2, 1), nc = 2): partial argument match of 'nc'
to 'ncol'
mapField: warning in matrix(c(2, 1), nc = 2): partial argument match of
'nc' to 'ncol'
plotField: warning in matrix(c(2, 1), nc = 2): partial argument match
of 'nc' to 'ncol'
satelliteOld: warning in matrix(c(2, 1), nc = 2): partial argument
match of 'nc' to 'ncol'
DS: no visible binding for global variable ‘yy’
DSpdf.exp: no visible binding for global variable ‘lon.cont’
DSpdf.exp: no visible binding for global variable ‘lat.cont’
DSpdf.exp: no visible binding for global variable ‘exp.par’
addland: no visible binding for global variable ‘lat.cont’
cdfextract: no visible binding for global variable ‘itim’
combineEOFs: no visible binding for global variable ‘eof1’
combineFields: no visible binding for global variable ‘tim.unit1’
combineFields: no visible binding for global variable ‘tim.torg1’
combineFields: no visible binding for global variable ‘ny.1’
combineFields: no visible binding for global variable ‘nx.1’
combineFields: no visible binding for global variable ‘ny.2’
combineFields: no visible binding for global variable ‘nx.2’
composite.field: missing arguments not allowed in calls to ‘list’
fixField: no visible binding for global variable ‘nd’
getdnmi: no visible binding for global variable ‘dnmi.meta’
getdnmi: no visible binding for global variable ‘dat’
getnacd: no visible binding for global variable ‘meta.nacd’
getnarp: no visible binding for global variable ‘narp.meta’
mapEOF: no visible binding for global variable ‘lon’
mapEOF: no visible binding for global variable ‘lat’
mapEOF: no visible binding for global variable ‘c.mon’
plotCCA: no visible binding for global variable ‘r’
plotCCA: no visible binding for global variable ‘x1’
plotCCA: no visible binding for global variable ‘main’
plotCCA: no visible binding for global variable ‘x2’
plotCCA: no visible binding for global variable ‘u.k’
plotCCA: no visible binding for global variable ‘i1’
plotCCA: no visible binding for global variable ‘v.k’
plotCCA: no visible binding for global variable ‘i2’
plotDS: no visible binding for global variable ‘id.1’
plotDS: no visible binding for global variable ‘lon.loc’
plotDS: no visible binding for global variable ‘lat.loc’
plotDS: no visible binding for global variable ‘n.fld’
plotDS: no visible binding for global variable ‘y.srt’
plotDS: no visible binding for global variable ‘x.srt’
plotDS: no visible binding for global variable ‘region’
plotDS: no visible binding for global variable ‘v.name’
plotDS: no visible binding for global variable ‘month’
plotDS: no visible binding for global variable ‘fit.r2’
plotDS: no visible binding for global variable ‘fit.p’
plotDS: no visible binding for global variable ‘unit’
plotDS: no visible binding for global variable ‘location’
plotDS: no visible binding for global variable ‘ex.tag’
plotDS: no visible binding for global variable ‘pred.name’
plotDS: no visible binding for global variable ‘pre.gcm’
plotDS: no visible binding for global variable ‘y.o’
plotDS: no visible binding for global variable ‘pre.y’
plotDS: no visible binding for global variable ‘gcm.trnd.p’
plotDS: no visible binding for global variable ‘rate.ds’
plotDS: no visible binding for global variable ‘rate.err’
plotDS: no visible binding for global variable ‘tr.est.p.fit’
plotDS: no visible binding for global variable ‘step.wise’
plotEOF: no visible binding for global variable ‘c.mon’
plotEOF: no visible binding for global variable ‘n.fld’
plotEOF: no visible binding for global variable ‘size’
plotEOF: no visible binding for global variable ‘transposed’
plotEOF: no visible binding for global variable ‘tot.var’
plotEOF: no visible binding for global variable ‘W’
plotEOF: no visible binding for global variable ‘dW’
plotEOF: no visible binding for global variable ‘var.eof’
plotEOF: no visible binding for global variable ‘PC’
plumePlot: no visible binding for global variable ‘ds’
satelliteOld: no visible binding for global variable ‘lat.cont’
stationmap: no visible binding for global variable ‘nacd.meta’
stationmap: no visible binding for global variable ‘meta’
testfastRegrid: no visible binding for global variable ‘DNMI.slp’
testfastRegrid: no visible binding for global variable ‘oslo.t2m’
testfastRegrid: no visible binding for global variable ‘DNMI.t2m’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ... [16s/23s] OK
checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
‘/data/gannet/tmp/ripley/R/packages/tests-devel/clim.pact.Rcheck/00check.log’
for details.