Check results for 'caret'

using R Under development (unstable) (2012-08-14 r60253)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘caret/DESCRIPTION’ ... OK
this is package ‘caret’ version ‘5.15-023’
checking package namespace information ... OK
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘vbmp’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking whether package ‘caret’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
QuinlanAttributes.data.frame: no visible binding for global variable
‘QuinlanDescription’
QuinlanAttributes.matrix: no visible binding for global variable
‘QuinlanDescription’
bwplot.diff.resamples: no visible binding for global variable ‘Metric’
bwplot.resamples: no visible binding for global variable ‘Model’
bwplot.resamples: no visible binding for global variable ‘Metric’
calibCalc: no visible binding for global variable ‘obs’
calibCalc: no visible binding for global variable ‘bin’
checkConditionalX: no visible binding for global variable ‘.outcome’
classLevels.splsda: no visible global function definition for ‘ilevels’
createGrid : somDims: no visible binding for global variable ‘.xdim’
createGrid : somDims: no visible binding for global variable ‘.ydim’
createGrid : lvqGrid: no visible binding for global variable ‘.k’
createGrid : lvqGrid: no visible binding for global variable ‘.size’
createModel: possible error in rda(trainX, trainY, gamma =
tuneValue$.gamma, lambda = tuneValue$.lambda, ...): unused
argument(s) (gamma = tuneValue$.gamma, lambda = tuneValue$.lambda)
createModel: no visible global function definition for
‘randomForestNWS’
createModel: no visible global function definition for ‘rfLSF’
createModel: possible error in rvm(as.matrix(trainX), trainY, kernel =
polydot, kpar = list(degree = tuneValue$.degree, scale =
tuneValue$.scale, offset = 1), ...): unused argument(s) (kernel =
polydot, kpar = list(degree = tuneValue$.degree, scale =
tuneValue$.scale, offset = 1))
createModel: possible error in rvm(as.matrix(trainX), trainY, kernel =
rbfdot, kpar = list(sigma = tuneValue$.sigma), ...): unused
argument(s) (kernel = rbfdot, kpar = list(sigma = tuneValue$.sigma))
createModel: possible error in rvm(as.matrix(trainX), trainY, kernel =
vanilladot(), ...): unused argument(s) (kernel = vanilladot())
createModel: no visible global function definition for ‘vbmp’
createModel: possible error in rrlda(trainX, trainY, lambda =
tuneValue$.lambda, alpha = tuneValue$.alpha, ...): unused argument(s)
(alpha = tuneValue$.alpha)
densityplot.diff.resamples: no visible binding for global variable
‘Metric’
densityplot.diff.resamples: no visible binding for global variable
‘ind’
densityplot.resamples: no visible binding for global variable ‘Model’
densityplot.resamples: no visible binding for global variable ‘Metric’
dotplot.resamples: no visible binding for global variable ‘Model’
dotplot.resamples: no visible binding for global variable ‘Metric’
icr.formula: no visible binding for global variable ‘thresh’
levelplot.diff.resamples: no visible binding for global variable
‘Metric’
looRfeWorkflow: no visible binding for global variable ‘iter’
looRfeWorkflow: no visible binding for global variable ‘Variables’
looSbfWorkflow: no visible binding for global variable ‘iter’
looTrainWorkflow: no visible binding for global variable ‘parm’
looTrainWorkflow: no visible binding for global variable ‘iter’
nominalRfeWorkflow: no visible binding for global variable ‘iter’
nominalRfeWorkflow: no visible binding for global variable ‘Variables’
nominalRfeWorkflow: no visible binding for global variable ‘method’
nominalRfeWorkflow: no visible binding for global variable ‘Resample’
nominalSbfWorkflow: no visible binding for global variable ‘dat’
nominalSbfWorkflow: no visible binding for global variable ‘iter’
nominalTrainWorkflow: no visible binding for global variable ‘parm’
nominalTrainWorkflow: no visible binding for global variable ‘iter’
nominalTrainWorkflow: no visible binding for global variable ‘Resample’
oobTrainWorkflow: no visible binding for global variable ‘parm’
overSampleImpute: no visible global function definition for ‘complete’
overSampleImpute: no visible global function definition for ‘mice’
partRuleSummary: no visible binding for global variable ‘m3’
plot.rfe: no visible binding for global variable ‘Selected’
plot.train: no visible binding for global variable ‘parameter’
plotClassProbs: no visible binding for global variable ‘Observed’
predictionFunction: no visible global function definition for
‘predictCPP’
predictionFunction: no visible binding for global variable ‘.alpha’
predictors.gbm: no visible binding for global variable ‘rel.inf’
predictors.sda: no visible binding for global variable ‘varIndex’
predictors.smda: no visible binding for global variable ‘varIndex’
probFunction: no visible global function definition for ‘predictCPP’
resamples.default: no visible binding for global variable ‘Variables’
rfe.default: no visible binding for global variable ‘Variables’
ripperRuleSummary: no visible binding for global variable ‘m3’
splom.resamples: no visible binding for global variable ‘Model’
splom.resamples: no visible binding for global variable ‘Metric’
tuneScheme: no visible binding for global variable ‘.alpha’
tuneScheme: no visible binding for global variable ‘.phi’
tuneScheme: no visible binding for global variable ‘.lambda’
varImp.rfe: no visible binding for global variable ‘Variables’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking examples ... [142s/147s] OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [92s/94s] OK
checking re-building of vignette PDFs ... [95s/99s] OK
checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/data/blackswan/ripley/R/packages/tests-devel/caret.Rcheck/00check.log’
for details.