• using R Under development (unstable) (2012-05-22 r59405)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘blockmodeling/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘blockmodeling’ version ‘0.1.8’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘blockmodeling’ can be installed ... [7s/16s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  gplot1: warning in grep(pat = "block", search()): partial argument
  match of 'pat' to 'pattern'
  gplot2: warning in grep(pat = "block", search()): partial argument
  match of 'pat' to 'pattern'
  loadnetwork2: warning in grep(patt = "^ *$", x = as.character(line)):
  partial argument match of 'patt' to 'pattern'
  loadpajek: warning in grep(patt = "^ *$", x = as.character(line)):
  partial argument match of 'patt' to 'pattern'
  savecluster: warning in grep(patt = "w32", x = version["os"]): partial
  argument match of 'patt' to 'pattern'
  savematrix: warning in grep(patt = "w32", x = version["os"]): partial
  argument match of 'patt' to 'pattern'
  savenetwork: warning in grep(patt = "w32", x = version["os"]): partial
  argument match of 'patt' to 'pattern'
  savepajek: warning in grep(patt = "w32", x = version["os"]): partial
  argument match of 'patt' to 'pattern'
  savevector: warning in grep(patt = "w32", x = version["os"]): partial
  argument match of 'patt' to 'pattern'
  check.these.par: no visible global function definition for
  ‘crit.fun.tmp’
  check.these.par: no visible binding for global variable ‘useM’
  crit.fun: no visible global function definition for ‘crit.fun.tmp’
  crit.fun: no visible binding for global variable ‘useM’
  gen.crit.fun: no visible binding for global variable ‘s’
  opt.par: no visible global function definition for ‘opt.par.tmp’
  opt.random.par: no visible global function definition for ‘opt.par.tmp’
  opt.these.par: no visible global function definition for ‘opt.par.tmp’
  opt.these.par: no visible binding for global variable ‘m’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'plot.mat':
  ‘plot.mat’ ‘plot.mat.nm’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... [22s/35s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/blockmodeling.Rcheck/00check.log’
  for details.