• using R Under development (unstable) (2012-05-22 r59404)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘aroma.core/DESCRIPTION’ ... OK
• this is package ‘aroma.core’ version ‘2.5.0’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Packages suggested but not available for checking:
  ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘aroma.core’ can be installed ... [9s/12s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [13s/22s] OK
  Running ‘PairedPSCNData,SEG.R’
  Running ‘PairedPSCNData.R’
  Running ‘RawCopyNumbers,states.R’
  Running ‘RawCopyNumbers.R’
  Running ‘RawGenomicSignals.R’
  Running ‘RawGenomicSignals.SEG,MP.R’
  Running ‘RawGenomicSignals.SEG.R’
  Running ‘RichDataFrame.R’
  Running ‘SegmentedCopyNumbers.R’
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/aroma.core.Rcheck/00check.log’
  for details.