• using R Under development (unstable) (2012-05-22 r59404)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘amer/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘amer’ version ‘0.6.10’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘amer’ can be installed ... [14s/20s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... WARNING
  reparameterizeDesign: warning in matrix(0, nr = nrow(B), nc = 0):
  partial argument match of 'nr' to 'nrow'
  reparameterizeDesign: warning in matrix(0, nr = nrow(B), nc = 0):
  partial argument match of 'nc' to 'ncol'
  amerSetup: no visible binding for global variable ‘bars’
  Found .Internal call in the following function:
  ‘expand.call’
  with calls to .Internal functions
  ‘match.call’
  
  Packages should not call .Internal(): it is not part of the API, for
  use only by R itself and subject to change without notice.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files look like leftovers/mistakes:
  ‘GAMMsUsingLME4.bbl’, ‘GAMMsUsingLME4.blg’
  Please remove them from your package.
• checking examples ... NONE
• checking for unstated dependencies in tests ... OK
• checking tests ... [37s/58s] OK
  Running ‘mgcvTests.R’
  Running ‘optionsTests.R’ [20s/30s]
  Running ‘predictTest.R’ [13s/20s]
• checking for unstated dependencies in vignettes ... NOTE
  ‘library’ or ‘require’ call not declared from: ‘lattice’
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [103s/167s] OK
• checking re-building of vignette PDFs ... [102s/158s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 2 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/amer.Rcheck/00check.log’
  for details.