• using R Under development (unstable) (2012-08-14 r60253)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘VHDClassification/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘VHDClassification’ version ‘0.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... NOTE
  Found the following hidden files and directories:
  .settings
  These were most likely included in error. See section ‘Package
  structure’ in the ‘Writing R Extensions’ manual.
• checking whether package ‘VHDClassification’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .tune.LDA: warning in tune(".learnLinearRulefortune", train.x = x,
  train.y = y, ranges = ranges, tunecontrol = tunecontrol, predict =
  predict, ...): partial argument match of 'predict' to 'predict.func'
  .tune.QDA: warning in tune(".learnQuadraticRulefortune", train.x = x,
  train.y = y, ranges = ranges, tunecontrol = tunecontrol, predict =
  predict, ...): partial argument match of 'predict' to 'predict.func'
• checking Rd files ... NOTE
  prepare_Rd: LinearRule-class.Rd:36: Dropping empty section \note
  prepare_Rd: LinearRule-class.Rd:35: Dropping empty section \author
  prepare_Rd: LinearRule-class.Rd:34: Dropping empty section \references
  prepare_Rd: LinearRule-class.Rd:39-42: Dropping empty section \seealso
  prepare_Rd: PartitionWithLLR-class.Rd:34: Dropping empty section \note
  prepare_Rd: PartitionWithLLR-class.Rd:33: Dropping empty section \author
  prepare_Rd: PartitionWithLLR-class.Rd:32: Dropping empty section \references
  prepare_Rd: PartitionWithLLR-class.Rd:38-41: Dropping empty section \seealso
  prepare_Rd: QuadraticRule-class.Rd:38: Dropping empty section \note
  prepare_Rd: VHDClassification-package.Rd:51-52: Dropping empty section \seealso
  prepare_Rd: getBinaryRule.Rd:25-27: Dropping empty section \details
  prepare_Rd: getLogLikeRatio.Rd:33-35: Dropping empty section \note
  prepare_Rd: getLogLikeRatio.Rd:39-41: Dropping empty section \seealso
  prepare_Rd: learnBinaryRule.Rd:45-47: Dropping empty section \details
  prepare_Rd: learnPartitionWithLLR.Rd:40-42: Dropping empty section \details
  prepare_Rd: learnPartitionWithLLR.Rd:43-49: Dropping empty section \value
  prepare_Rd: learnPartitionWithLLR.Rd:56-58: Dropping empty section \note
  prepare_Rd: learnPartitionWithLLR.Rd:53-55: Dropping empty section \author
  prepare_Rd: learnPartitionWithLLR.Rd:50-52: Dropping empty section \references
  prepare_Rd: learnPartitionWithLLR.Rd:62-64: Dropping empty section \seealso
  prepare_Rd: learnPartitionWithLLR.Rd:65-67: Dropping empty section \examples
  prepare_Rd: plotClassifRule.Rd:51: Dropping empty section \keyword
  prepare_Rd: plotClassifRule.Rd:22-24: Dropping empty section \details
  prepare_Rd: plotClassifRule.Rd:25-31: Dropping empty section \value
  prepare_Rd: plotClassifRule.Rd:38-40: Dropping empty section \note
  prepare_Rd: plotClassifRule.Rd:35-37: Dropping empty section \author
  prepare_Rd: plotClassifRule.Rd:32-34: Dropping empty section \references
  prepare_Rd: plotClassifRule.Rd:44-46: Dropping empty section \seealso
  prepare_Rd: plotClassifRule.Rd:47-48: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [18s/18s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [58s/58s] OK
  Running ‘TestFileLinear.R’ [58s/58s]
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/VHDClassification.Rcheck/00check.log’
  for details.