• using R Under development (unstable) (2012-05-22 r59401)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘TauP.R/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘TauP.R’ version ‘1.0’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... WARNING
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking whether package ‘TauP.R’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Earthplot: warning in PolarPlot(0:360, rp, type = "l", method = lines,
  degree = TRUE, geographical = TRUE, col = "black", ...): partial
  argument match of 'degree' to 'degrees'
  Earthplot: warning in PolarPlot(0:360, rp - model$conr, method = lines,
  degree = TRUE, geographical = TRUE, lwd = 0.25, col = "black", ...):
  partial argument match of 'degree' to 'degrees'
  Earthplot: warning in PolarPlot(0:360, rp - model$moho, method = lines,
  degree = TRUE, geographical = TRUE, lwd = 0.25, col = "black", ...):
  partial argument match of 'degree' to 'degrees'
  Earthplot: warning in PolarPlot(0:360, rp - model$d410, method = lines,
  degree = TRUE, geographical = TRUE, col = "black", ...): partial
  argument match of 'degree' to 'degrees'
  Earthplot: warning in PolarPlot(0:360, rp - model$d520, method = lines,
  degree = TRUE, geographical = TRUE, col = "black", ...): partial
  argument match of 'degree' to 'degrees'
  Earthplot: warning in PolarPlot(0:360, rp - model$d660, method = lines,
  degree = TRUE, geographical = TRUE, col = "black", ...): partial
  argument match of 'degree' to 'degrees'
  Earthplot: warning in PolarPlot(0:360, rp - model$cmb, method = lines,
  degree = TRUE, geographical = TRUE, col = "black", ...): partial
  argument match of 'degree' to 'degrees'
  Earthplot: warning in PolarPlot(0:360, rp - model$icb, method = lines,
  degree = TRUE, geographical = TRUE, col = "black", ...): partial
  argument match of 'degree' to 'degrees'
  Rayfan: warning in PolarPlot(x$segx[[j]], rp - x$segz[[j]], method =
  lines, degree = TRUE, geographical = TRUE, col = col[i]): partial
  argument match of 'degree' to 'degrees'
  Rayfan: warning in PolarPlot(-x$segx[[j]], rp - x$segz[[j]], method =
  lines, degree = TRUE, geographical = TRUE, col = col[i]): partial
  argument match of 'degree' to 'degrees'
• checking Rd files ... NOTE
  prepare_Rd: AnalyzeLVZ.Rd:33-34: Dropping empty section \note
  prepare_Rd: AnalyzeLVZ.Rd:30-31: Dropping empty section \references
  prepare_Rd: AnalyzeLVZ.Rd:37-38: Dropping empty section \seealso
  prepare_Rd: CalcTP.Rd:23-24: Dropping empty section \note
  prepare_Rd: CalcTP.Rd:20-21: Dropping empty section \references
  prepare_Rd: CalcTP.Rd:27-28: Dropping empty section \seealso
  prepare_Rd: CalcTPsum.Rd:24-25: Dropping empty section \note
  prepare_Rd: CalcTPsum.Rd:21-22: Dropping empty section \references
  prepare_Rd: CalcTPsum.Rd:28-29: Dropping empty section \seealso
  prepare_Rd: CalcXP.Rd:24-25: Dropping empty section \note
  prepare_Rd: CalcXP.Rd:21-22: Dropping empty section \references
  prepare_Rd: CalcXP.Rd:28-29: Dropping empty section \seealso
  prepare_Rd: CalcXPsum.Rd:25-26: Dropping empty section \note
  prepare_Rd: CalcXPsum.Rd:22-23: Dropping empty section \references
  prepare_Rd: CalcXPsum.Rd:29-30: Dropping empty section \seealso
  prepare_Rd: ConvAng2p.Rd:41-43: Dropping empty section \note
  prepare_Rd: ConvAng2p.Rd:35-37: Dropping empty section \references
  prepare_Rd: ConvAng2p.Rd:47-49: Dropping empty section \seealso
  prepare_Rd: ConvP2Vdepthinv.Rd:31-33: Dropping empty section \note
  prepare_Rd: ConvP2Vdepthinv.Rd:27-29: Dropping empty section \references
  prepare_Rd: ConvP2Vdepthinv.Rd:37-39: Dropping empty section \seealso
  prepare_Rd: ConvVdepth2p.Rd:18-20: Dropping empty section \details
  prepare_Rd: ConvVdepth2p.Rd:32-34: Dropping empty section \note
  prepare_Rd: ConvVdepth2p.Rd:26-28: Dropping empty section \references
  prepare_Rd: DistSummary.Rd:38: Dropping empty section \note
  prepare_Rd: DistSummary.Rd:36: Dropping empty section \references
  prepare_Rd: Earthplot.Rd:51-53: Dropping empty section \note
  prepare_Rd: Earthplot.Rd:45-47: Dropping empty section \references
  prepare_Rd: EmptyModel.Rd:9-10: Dropping empty section \details
  prepare_Rd: EmptyModel.Rd:15-16: Dropping empty section \note
  prepare_Rd: EmptyModel.Rd:12-13: Dropping empty section \references
  prepare_Rd: EmptyModel.Rd:19-20: Dropping empty section \seealso
  prepare_Rd: FindDiscon.Rd:16-17: Dropping empty section \note
  prepare_Rd: FindDiscon.Rd:13-14: Dropping empty section \references
  prepare_Rd: FindDiscon.Rd:20-21: Dropping empty section \seealso
  prepare_Rd: FindDist4p.Rd:39-41: Dropping empty section \note
  prepare_Rd: FindDist4p.Rd:35-37: Dropping empty section \references
  prepare_Rd: FindP4Dist.Rd:17-18: Dropping empty section \details
  prepare_Rd: FindP4Dist.Rd:28-29: Dropping empty section \note
  prepare_Rd: FindP4Dist.Rd:25-26: Dropping empty section \references
  prepare_Rd: FindP4Dist.Rd:30-31: Dropping empty section \seealso
  prepare_Rd: FindPrange.Rd:14-15: Dropping empty section \details
  prepare_Rd: FindPrange.Rd:25-26: Dropping empty section \note
  prepare_Rd: FindPrange.Rd:22-23: Dropping empty section \references
  prepare_Rd: FindPrange.Rd:29-30: Dropping empty section \seealso
  prepare_Rd: FindRoots.Rd:16-17: Dropping empty section \details
  prepare_Rd: FindRoots.Rd:26-27: Dropping empty section \note
  prepare_Rd: FindRoots.Rd:23-24: Dropping empty section \references
  prepare_Rd: FindRoots.Rd:30-31: Dropping empty section \seealso
  prepare_Rd: FindTime4p.Rd:32-34: Dropping empty section \note
  prepare_Rd: FindTime4p.Rd:28-30: Dropping empty section \references
  prepare_Rd: HoneP.Rd:20-22: Dropping empty section \details
  prepare_Rd: HoneP.Rd:31-33: Dropping empty section \note
  prepare_Rd: HoneP.Rd:27-29: Dropping empty section \references
  prepare_Rd: HoneP.Rd:37-39: Dropping empty section \seealso
  prepare_Rd: HoneP.Rd:40-42: Dropping empty section \examples
  prepare_Rd: ImproveModel.Rd:23-24: Dropping empty section \note
  prepare_Rd: ImproveModel.Rd:20-21: Dropping empty section \references
  prepare_Rd: ImproveModel.Rd:27-28: Dropping empty section \seealso
  prepare_Rd: InterpModel.Rd:13-14: Dropping empty section \details
  prepare_Rd: InterpModel.Rd:19-20: Dropping empty section \note
  prepare_Rd: InterpModel.Rd:16-17: Dropping empty section \references
  prepare_Rd: InterpModel.Rd:23-24: Dropping empty section \seealso
  prepare_Rd: LVZSmp.Rd:11-12: Dropping empty section \details
  prepare_Rd: LVZSmp.Rd:21-22: Dropping empty section \note
  prepare_Rd: LVZSmp.Rd:18-19: Dropping empty section \references
  prepare_Rd: LVZSmp.Rd:25-26: Dropping empty section \seealso
  prepare_Rd: LinInterp.Rd:25-26: Dropping empty section \note
  prepare_Rd: LinInterp.Rd:22-23: Dropping empty section \references
  prepare_Rd: LinInterp.Rd:29-30: Dropping empty section \seealso
  prepare_Rd: MakePscan.Rd:16-18: Dropping empty section \details
  prepare_Rd: MakePscan.Rd:34-36: Dropping empty section \note
  prepare_Rd: MakePscan.Rd:30-32: Dropping empty section \references
  prepare_Rd: MakePscan.Rd:40-42: Dropping empty section \seealso
  prepare_Rd: OptimizeDist.Rd:32-34: Dropping empty section \note
  prepare_Rd: OptimizeDist.Rd:28-30: Dropping empty section \references
  prepare_Rd: OptimizeDist.Rd:38-40: Dropping empty section \seealso
  prepare_Rd: OptimizeDist.Rd:41-43: Dropping empty section \examples
  prepare_Rd: PolarPlot.Rd:24-26: Dropping empty section \details
  prepare_Rd: PolarPlot.Rd:32-34: Dropping empty section \note
  prepare_Rd: PolarPlot.Rd:28-30: Dropping empty section \references
  prepare_Rd: PolarPlot.Rd:38-40: Dropping empty section \seealso
  prepare_Rd: ReadND.Rd:38-40: Dropping empty section \note
  prepare_Rd: ReadND.Rd:44-46: Dropping empty section \seealso
  prepare_Rd: SlopeInt.Rd:13-14: Dropping empty section \details
  prepare_Rd: SlopeInt.Rd:22-23: Dropping empty section \note
  prepare_Rd: SlopeInt.Rd:19-20: Dropping empty section \references
  prepare_Rd: SlopeInt.Rd:26-27: Dropping empty section \seealso
  prepare_Rd: StripRepetitions.Rd:12-13: Dropping empty section \details
  prepare_Rd: StripRepetitions.Rd:18-19: Dropping empty section \note
  prepare_Rd: StripRepetitions.Rd:15-16: Dropping empty section \references
  prepare_Rd: StripRepetitions.Rd:22-23: Dropping empty section \seealso
  prepare_Rd: TransformF2Sz.Rd:25-27: Dropping empty section \details
  prepare_Rd: TransformF2Sz.Rd:49-51: Dropping empty section \note
  prepare_Rd: TransformF2Sz.Rd:43-45: Dropping empty section \references
  prepare_Rd: TransformF2Sz.Rd:55-57: Dropping empty section \seealso
  prepare_Rd: ak135.Rd:31-33: Dropping empty section \details
  prepare_Rd: ak135.Rd:34-35: Dropping empty section \source
  prepare_Rd: iasp91.Rd:31-32: Dropping empty section \details
  prepare_Rd: iasp91.Rd:33-34: Dropping empty section \source
  prepare_Rd: meshgrid.Rd:12-13: Dropping empty section \details
  prepare_Rd: meshgrid.Rd:18-19: Dropping empty section \note
  prepare_Rd: meshgrid.Rd:15-16: Dropping empty section \references
  prepare_Rd: meshgrid.Rd:22-23: Dropping empty section \seealso
  prepare_Rd: meshgrid.Rd:24: Dropping empty section \examples
  prepare_Rd: model.Rd:31-33: Dropping empty section \details
  prepare_Rd: model.Rd:34-35: Dropping empty section \source
  prepare_Rd: polaraxis.Rd:14-16: Dropping empty section \details
  prepare_Rd: polaraxis.Rd:22-24: Dropping empty section \note
  prepare_Rd: polaraxis.Rd:18-20: Dropping empty section \references
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [55s/70s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 2 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/TauP.R.Rcheck/00check.log’
  for details.