• using R Under development (unstable) (2012-05-22 r59401)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘RcppGSL/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘RcppGSL’ version ‘0.1.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘RcppGSL’ can be installed ... [8s/17s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Found the following possibly unsafe calls:
  File 'R/inline.R':
  found assignInNamespace("gsl_cflags", gsl_cflags, NAMESPACE)
  found assignInNamespace("gsl_libs", gsl_libs, NAMESPACE)
  found assignInNamespace("know_flags", TRUE, NAMESPACE)
  print.summary.fastLm: warning in printCoefmat(x$coefficients, P.value =
  TRUE, has.Pvalue = TRUE): partial argument match of 'P.value' to
  'P.values'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files should probably not be installed:
  ‘Makefile’, ‘RcppGSL-unitTests.tex’, ‘RcppGSL.tex’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [18s/28s] OK
  Running ‘doRUnit.R’ [18s/27s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Loading required package: RcppGSL
  Loading required package: Rcpp
  make[1]: Entering directory `/data/gannet/tmp/ripley/R/packages/tests-devel/RcppGSL.Rcheck/vign_test/RcppGSL/inst/doc'
  cp -f RcppGSL/RcppGSL.Rnw .
  /data/gannet/ripley/R/R-devel/bin/Rscript --vanilla -e "require(highlight); driver <- HighlightWeaveLatex(boxes = TRUE); Sweave( 'RcppGSL.Rnw', driver = driver ); "
  Loading required package: highlight
  Loading required package: tools
  Loading required package: codetools
  Loading required package: parser
  Loading required package: Rcpp
  Writing to file RcppGSL.tex
  Processing code chunks with options ...
  1 : keep.source term verbatim
  Loading required package: inline
  terminate called after throwing an instance of 'Rcpp::not_compatible'
  what(): expecting a single value
  make[1]: *** [RcppGSL.pdf] Aborted (core dumped)
  make[1]: Leaving directory `/data/gannet/tmp/ripley/R/packages/tests-devel/RcppGSL.Rcheck/vign_test/RcppGSL/inst/doc'
  Error in buildVignettes(dir = "/data/gannet/tmp/ripley/R/packages/tests-devel/RcppGSL.Rcheck/vign_test/RcppGSL") :
  running 'make' failed
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/RcppGSL.Rcheck/00check.log’
  for details.