- using R Under development (unstable) (2012-05-22 r59401)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘Rcpp/DESCRIPTION’ ... OK
- this is package ‘Rcpp’ version ‘0.9.10’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘Rcpp’ can be installed ... [41s/60s] OK
- checking installed package size ... NOTE
installed size is 19.8Mb
sub-directories of 1Mb or more:
doc 2.0Mb
include 6.4Mb
lib 8.0Mb
libs 2.3Mb
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... WARNING
Found the following possibly unsafe calls:
File 'R/tools.R':
found unlockBinding(x, env)
Found .Internal call in the following function:
‘rcpp_tryCatch’
with calls to .Internal functions
‘.addCondHands’
Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [285s/391s] OK
Running ‘doRUnit.R’ [284s/391s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... NOTE
Error in re-building vignettes:
...
cp -f Rcpp-FAQ/Rcpp-FAQ-fake.Rnw Rcpp-FAQ.Rnw
cp -f Rcpp-modules/Rcpp-modules-fake.Rnw Rcpp-modules.Rnw
cp -f Rcpp-package/Rcpp-package-fake.Rnw Rcpp-package.Rnw
cp -f Rcpp-quickref/Rcpp-quickref-fake.Rnw Rcpp-quickref.Rnw
cp -f Rcpp-sugar/Rcpp-sugar-fake.Rnw Rcpp-sugar.Rnw
cp rcpp.index.html index.html
cp -f Rcpp-modules/Rcpp-modules.Rnw .
/data/gannet/ripley/R/R-devel/bin/Rscript --vanilla -e "require(highlight); driver <- HighlightWeaveLatex(boxes = TRUE, bg = 'white' ); Sweave( 'Rcpp-modules.Rnw', driver = driver ); "
Loading required package: highlight
Loading required package: tools
Loading required package: codetools
Loading required package: parser
Loading required package: Rcpp
Writing to file Rcpp-modules.tex
Processing code chunks with options ...
1 : keep.source term verbatim
Loading required package: inline
2 : keep.source term verbatim
terminate called after throwing an instance of 'Rcpp::not_compatible'
what(): expecting a single value
make[1]: *** [Rcpp-modules.pdf] Aborted (core dumped)
make[1]: Leaving directory `/data/gannet/tmp/ripley/R/packages/tests-devel/Rcpp.Rcheck/vign_test/Rcpp/inst/doc'
Error in buildVignettes(dir = "/data/gannet/tmp/ripley/R/packages/tests-devel/Rcpp.Rcheck/vign_test/Rcpp") :
running 'make' failed
Execution halted
- checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
‘/data/gannet/tmp/ripley/R/packages/tests-devel/Rcpp.Rcheck/00check.log’
for details.