• using R Under development (unstable) (2012-05-22 r59401)
  • using platform: x86_64-unknown-linux-gnu (64-bit)
  • using session charset: UTF-8
  • checking for file ‘Rcpp/DESCRIPTION’ ... OK
  • this is package ‘Rcpp’ version ‘0.9.10’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘Rcpp’ can be installed ... [41s/60s] OK
  • checking installed package size ... NOTE
    installed size is 19.8Mb
    sub-directories of 1Mb or more:
    doc 2.0Mb
    include 6.4Mb
    lib 8.0Mb
    libs 2.3Mb
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... WARNING
    Found the following possibly unsafe calls:
    File 'R/tools.R':
    found unlockBinding(x, env)
    Found .Internal call in the following function:
    ‘rcpp_tryCatch’
    with calls to .Internal functions
    ‘.addCondHands’

    Packages should not call .Internal(): it is not part of the API, for
    use only by R itself and subject to change without notice.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking examples ... OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [285s/391s] OK
    Running ‘doRUnit.R’ [284s/391s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignette PDFs ... NOTE
    Error in re-building vignettes:
    ...
    cp -f Rcpp-FAQ/Rcpp-FAQ-fake.Rnw Rcpp-FAQ.Rnw
    cp -f Rcpp-modules/Rcpp-modules-fake.Rnw Rcpp-modules.Rnw
    cp -f Rcpp-package/Rcpp-package-fake.Rnw Rcpp-package.Rnw
    cp -f Rcpp-quickref/Rcpp-quickref-fake.Rnw Rcpp-quickref.Rnw
    cp -f Rcpp-sugar/Rcpp-sugar-fake.Rnw Rcpp-sugar.Rnw
    cp rcpp.index.html index.html
    cp -f Rcpp-modules/Rcpp-modules.Rnw .
    /data/gannet/ripley/R/R-devel/bin/Rscript --vanilla -e "require(highlight); driver <- HighlightWeaveLatex(boxes = TRUE, bg = 'white' ); Sweave( 'Rcpp-modules.Rnw', driver = driver ); "
    Loading required package: highlight
    Loading required package: tools
    Loading required package: codetools
    Loading required package: parser
    Loading required package: Rcpp
    Writing to file Rcpp-modules.tex
    Processing code chunks with options ...
    1 : keep.source term verbatim
    Loading required package: inline
    2 : keep.source term verbatim
    terminate called after throwing an instance of 'Rcpp::not_compatible'
    what(): expecting a single value
    make[1]: *** [Rcpp-modules.pdf] Aborted (core dumped)
    make[1]: Leaving directory `/data/gannet/tmp/ripley/R/packages/tests-devel/Rcpp.Rcheck/vign_test/Rcpp/inst/doc'
    Error in buildVignettes(dir = "/data/gannet/tmp/ripley/R/packages/tests-devel/Rcpp.Rcheck/vign_test/Rcpp") :
    running 'make' failed
    Execution halted
  • checking PDF version of manual ... OK
    WARNING: There was 1 warning.
    NOTE: There were 2 notes.
    See
    ‘/data/gannet/tmp/ripley/R/packages/tests-devel/Rcpp.Rcheck/00check.log’
    for details.